RNA id: TU120019


Basic Information

Item Value
RNA id TU120019
length 443
RNA type TUCP
GC content 0.50
exon number 4
gene id LOC122353892
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11860659 ~ 11868523 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTTCATTTCTCTTCGCTTAAACTCTCACgagaaagtgaaagtgaagacCGAGGAGGAGAGAAACTCGCGGGAAAAGCTTGaCTTCACGTGCACTTTGTGCCGAATCTACTGGATCCACTCTTAAAGGACTGTGGAAAAAGACTTGTGTGTTCAGCATGTCTACAGTAGGAGTGGATGTGATCGAAGCAGCAGCTCTGGGGAGGTCCTTCCGGCCGGGGATGCTGTACGACTGCAGGAAAGATGCTCTCGTTCCAGgaatcGCACTGTGGGGTCCGGAAAAGCTCCAGCAGAGTTTACAAACCCGTCCCCAAAACAACACCGACATCAAAGTCACCGCTTCAGACTCCATCGAGGACAAATCAGCCGTACTGAACATAGACGGCTCTCTGAAACTGAGTCTTTTAGGTGGACTGGTCAAAGTCACAGGAGCAGCCAAATATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120014 lncRNA upstream 3623 11851045 ~ 11857319 (+) False shroom2b
TU119632 lncRNA upstream 46211 11773618 ~ 11814731 (+) True G80887
TU119635 lncRNA upstream 85820 11774726 ~ 11775122 (+) True G80889
TU119567 lncRNA upstream 94888 11736372 ~ 11766054 (+) False G80847
TU119569 lncRNA upstream 94888 11736372 ~ 11766054 (+) True G80847
TU120141 lncRNA downstream 342056 12205168 ~ 12225492 (+) True G81213
TU120168 lncRNA downstream 372080 12235192 ~ 12236177 (+) True G81234
TU120167 lncRNA downstream 372476 12235588 ~ 12236177 (+) False G81234
TU120170 lncRNA downstream 374706 12237818 ~ 12238356 (+) True G81236
TU120172 lncRNA downstream 375358 12238470 ~ 12238784 (+) False G81238
XM_043251723.1 mRNA upstream 8489 11827878 ~ 11852453 (+) True shroom2b
XM_043251727.1 mRNA upstream 8489 11827878 ~ 11852453 (+) False shroom2b
XM_043251726.1 mRNA upstream 8490 11827878 ~ 11852452 (+) False shroom2b
XM_043251724.1 mRNA upstream 8493 11827878 ~ 11852449 (+) False shroom2b
XM_043251725.1 mRNA upstream 8496 11827878 ~ 11852446 (+) False shroom2b
XM_043251730.1 mRNA downstream 7313 11870425 ~ 11883430 (+) True clcn4
XM_043251713.1 mRNA downstream 30236 11893348 ~ 11955071 (+) True LOC122353838
XM_043251714.1 mRNA downstream 30236 11893348 ~ 11955071 (+) False LOC122353838
XM_043251715.1 mRNA downstream 30236 11893348 ~ 11955071 (+) False LOC122353838
XM_043251721.1 mRNA downstream 30236 11893348 ~ 11955071 (+) False LOC122353838
TU119601 other upstream 160728 11698364 ~ 11700214 (+) False tomm20b
TU119538 other upstream 188004 11580026 ~ 11672938 (+) False LOC122354243
TU119539 other upstream 200000 11580026 ~ 11660942 (+) True LOC122354243
TU119513 other upstream 331306 11528734 ~ 11529636 (+) False eif4a3
TU119512 other upstream 333900 11525059 ~ 11527042 (+) True rpl37a
TU120138 other downstream 329642 12192754 ~ 12225492 (+) False G81213
TU120140 other downstream 343643 12206755 ~ 12225492 (+) False G81213
TU120139 other downstream 347840 12210952 ~ 12225492 (+) False G81213
TU120226 other downstream 719803 12582915 ~ 12585641 (+) True G81268
TU120348 other downstream 836948 12700060 ~ 12700884 (+) True G81364

Expression Profile