RNA id: XM_043251783.1


Basic Information

Item Value
RNA id XM_043251783.1
length 4136
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC122353892
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11860659 ~ 11868523 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGAGCTCTCCGCGCAGTCAGTAGGTGTGGTCGTCTTGAAGAGGTTTAGGTTTAAACAGTTTTAGGTAGGACGGACTGCAGTTTCGCTACATTTTGCACGGCCAATTACACTCACATcgcagttttattttatgcaaataatttaaccaaataaaaagaTTGAATAACGTTTTAAAACACAAGGACCCCAGCTGCATTCAAGGAAACCCTTTCTTTTATTGTGTTCATGGTCAGTCTTCAGTGTGACTTCCTATGGGAGGGTCTGGTCTGGTCTCTGGGCTAACCTTCATTTCTCTTCGCTTAAACTCTCACgagaaagtgaaagtgaagacCGAGGAGGAGAGAAACTCGCGGGAAAAGCTTGaCTTCACGTGCACTTTGTGCCGAATCTACTGGATCCACTCTTAAAGCAACAACGAACAGGATAAGTGTAAACCTGTGCAAGCAATTTTACaaagttcagaaaaaaatcaataataatttgtGCAATTGAGCATCAAACGCAATCTGGGAATGAAAGACTTCTTCCACATTTGACAAAACGTTAATTATAAACGAGTGCATGTGAAGTAAGCACGACTTTCCGGTGACAGACTGAACCAGACGGGTCTGTCTTTCAGGACTGTGGAAAAAGACTTGTGTGTTCAGCATGTCTACAGTAGGAGTGGATGTGATCGAAGCAGCAGCTCTGGGGAGGTCCTTCCGGCCGGGGATGCTGTACGACTGCAGGAAAGATGCTCTCGTTCCAGgaatcGCACTGTGGGGTCCGGAAAAGCTCCAGCAGAGTTTACAAACCCGTCCCCAAAACAACACCGACATCAAAGTCACCGCTTCAGACTCCATCGAGGACAAATCAGCCGTACTGAACATAGACGGCTCTCTGAAACTGAGTCTTTTAGGTGGACTGGTCAAAGTCACAGGAGCAGCCAAATATCTCAACGACACCAAGAAGTCTTTCAGACAGAAGAGACTGACACTACATTATCACTCAGCCTGCAGGTTTGAAGAACTGAGCATCAATCGCTTGGCGCCTGAAGATATCACGGTTGACGACGACGCAGCGACGCACGTGGTGACGGCAGTGCTGTACGGAGCTGACGCCTGCTTCGTGTTTGATAGAGAGGTTTCACCAGACGAGGACCAAAATGCAGTAGAAGGAGAAGCAAAACTGGCCCTCGAGAAACTCAGATTCATTTCGGCGGACGGGAACGCCAGTCCGAAGACGCAGTGGCGCTCAGAAGCACCCAGTCCAGAAGTCACGTGCACGTTTTACGGCGACGTCCAGTTACCGTCAAACCCGGCTTCTTTTGAAGAAGCCCTGAAGGTTTTCGCTGATCTTCCAACACTGCTTGGAGAAAAGAAAGCGCTCGCCGTTCCCGTGAGAGTCTGGCTTCATCCTCTGAACAAACTTCGCTCGAGAGCTTTCGCGGACGTCGGCGTGGATCTGATCGCGGCCGTAGAGTCAGCCATTGAGAGTCTAAACACAGCTGAGATGAGATGCGGTGATCTTCTGAAAGACTCTCCCGCTCTGACCTTTACTGCGTTTCGAGACAAAATTATTCAGATGCAGGAAAACTGCGCTTCGTACAAAACGAGGCTCGCGAAGAGACTCGGCTCTCTGCTGCCGAGCATCCGTGGAGGCTTGTTGAAGGAAACGGCGTTAAACGATCTTCTACAAGAACACCGGGAATCTCCCTTCAGGAGATCCGAGCTTGCAGAATggctgaaagagagagagagagagtctgagaTCGTTAAATCGGTCCTCCGACAGCTGCAGGACGCCGGCGCGCGAGCAGACGTCGACGTGGATGTGATGTTAATGGATCTGGAAGTCGAAAATGTGGTCTGTTTCGTGTTCACATCGCTGGGCCGGACAGATGCGCTGCTGCTCCAACAAAAGGCCTGCTTGAGTCCTTCagaaaaagatagaaacaaCGATAACCGCTCTGGCGCAAAGCGAACGTCTTGGCTCAGTCCCGAGATCCGAAAGGCCATGAGGAGGAACTTGAAGACGTTTAAGAGCTTGATCGATTCAGAAGACCGCAAGCCAGCCAGGTTTATCGTGTCCTCGAGTGAAATGGAGAATAATCCTGGTTCCTGCGTTCTGCTGTATGAAAGTGAATGTGATGAAGCCGTCTGCTTTACACCTCCATCCAAACCATCCTGTCCGGTCACCGAAGAGGTCAAAGAAAACAGCGTGTCTCTGAAGGTTCCTCCGGCGTGCTCCTCAACAGAGGAGCTCAGATTACTGTGTAAAGCGAAGCAGGACTCGGTCTGGAAATCTAAAGCCGTGATGAAGGATGAAAACACGGTTACTCTGACTGATCTGAGAGCAGGAACCGAGTACGAGATGGTGTGTGCGGCGGTGGGGAAACTCAACTACACCGTGTACAGTGACGCCACTGAAGTTACCACGGAGGGAAGGAGCAGTACGAGTACCGAAGAAACCTCTACAGGACGAGTTGAAGCGACCGGAAGGAGCCAGAATTTGAACGCACTGACGAATCCGGATGTTTACAGCATCAAGCTCAAGCCGCCCGTGATCAACCCAAAGAGCAGCAAACAGAGCCAATCATCAGcATCAGTGTCCTCATCGAAGGCGTTCAGACTGAGGCTGAAGGAGGAGTATCAGTATCTGAACGGAAGACAAAACCTCAACGATGTCTTCGTCGAGCAACTCATCACAGAAGACCCCGACTCTCACATCAGCGACGGCAGACGCATCCCGCGCCAAAACGTGCTCGAAGGCCAGCATATCAGGAGCGTCTTGCTGAAGGGAGACGCCGGCGTCGGGAAAACCACGGCCGTGCAGAAGTTCGTCCTGGACTGGGCTGAAGAGAAGTCAAACGCAGACATCGCCTACATCTTTCCAATACCTTTTCagacgctcaacgtgatcagaGAGACGACGAAGACGTGTAGCTTCGCCGGGATCCTGCGGCGGTGCTTCGGAAAGGACGAACGCCTGAAAGTCTACGGCTCCGAGCGGATCGTGCTGATCTTCGACGGGCTGAATGAGTTCAAACCTCCTCTGGATTTCAAAAGCGCGAAGACGATTACGGATAAAAACCAGCCggcctctgtctcttgccttcTGGCGAACGTCATCGCGGGAAATCTGTTTCCGAACGCTCAGATCTGGATCACCAGCAGACCGGCAGCGGTCAAGCAGATTCCCGATGCATTTATTGATCGCGTGACGGAGATCCACGGCTTTACCGATCTACAGAAGAAGGAGTATTTCGGGAAGAGCATTAGGGATCAGGCGACGGCCGGTAAAGTCATCGGTCACATCCAAAAATCCCGCCGCATCGAGAGCATGTGTCATCTCCCGGATTACTGCAGAATCGTCGCGGCGATTCCAGAGAAGATGTTCAGATCATGCCGTGACGATTTCCCCAAGACCCTCACCCAGATGTACGCCAGACTCCTGCTGGATCAGACCGAACTCATTCTAGAGAGGAAAGAGAGCATCGTCGCTCTGGGCAGGATAGCGCTTCACCTGCTGGCGAACGGAAACGCTCTGTTCTGTCGCGAGCACTTGGAGAGATGTGGCTTCGGAGACGAAGGCGTTCTGGCGCGCGCGTCGATCGTGAAGGAGGTCGGGGATGAAAGCGGCCGTAAATTGCTGCGTTTCGCGGATCGCAGAGCGCAGGAGTTTCTGGCGGCTTTATACGCCACCGAAATCATTAACGTGGACAACGATCTTCAGCTCAGAGATCTGTCCGCGCTGAGACTCGGAAAGTACTCCTTTACAGACACTGGATCGCTCTTCGCGGTGATAGAAAGCACTTTAGAAAGACAAATagatcttttcttcttctttttaatgGGTTTGTCGCTGGAGTCCAGTCAGACAGCTTTAAAAGGCCTCCTGACACCGAGAAAAAGATGCTCTTCGATCAGTCAAAGCCCGGTTAACGTCATCAAGCAGCTGATTAATTCCAATCTGGGAGATACAGACCGATGCCGTTTCCTGTTTGATGCTTTGAAAGAGCTGGATGAGCGATACTTAATCcaggaaataaaaacacagctgaaatCTGGACTCAAACCCTCTCCTGCTGAGATTTCAGCTCTGGTCAATATAGAAAAGtgactctatatatatatatatatatatatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120014 lncRNA upstream 3340 11851045 ~ 11857319 (+) False shroom2b
TU119632 lncRNA upstream 45928 11773618 ~ 11814731 (+) True G80887
TU119635 lncRNA upstream 85537 11774726 ~ 11775122 (+) True G80889
TU119568 lncRNA upstream 94605 11741614 ~ 11766054 (+) False G80847
TU120141 lncRNA downstream 336645 12205168 ~ 12225492 (+) True G81213
TU120168 lncRNA downstream 366669 12235192 ~ 12236177 (+) True G81234
TU120167 lncRNA downstream 367065 12235588 ~ 12236177 (+) False G81234
TU120170 lncRNA downstream 369295 12237818 ~ 12238356 (+) True G81236
TU120172 lncRNA downstream 369947 12238470 ~ 12238784 (+) False G81238
XM_043251723.1 mRNA upstream 8206 11827878 ~ 11852453 (+) True shroom2b
XM_043251727.1 mRNA upstream 8206 11827878 ~ 11852453 (+) False shroom2b
XM_043251726.1 mRNA upstream 8207 11827878 ~ 11852452 (+) False shroom2b
XM_043251724.1 mRNA upstream 8210 11827878 ~ 11852449 (+) False shroom2b
XM_043251725.1 mRNA upstream 8213 11827878 ~ 11852446 (+) False shroom2b
XM_043251730.1 mRNA downstream 1902 11870425 ~ 11883430 (+) True clcn4
XM_043251713.1 mRNA downstream 24825 11893348 ~ 11955071 (+) True LOC122353838
XM_043251714.1 mRNA downstream 24825 11893348 ~ 11955071 (+) False LOC122353838
XM_043251715.1 mRNA downstream 24825 11893348 ~ 11955071 (+) False LOC122353838
XM_043251721.1 mRNA downstream 24825 11893348 ~ 11955071 (+) False LOC122353838
TU119601 other upstream 160445 11698364 ~ 11700214 (+) False tomm20b
TU119538 other upstream 187721 11580026 ~ 11672938 (+) False LOC122354243
TU119539 other upstream 199717 11580026 ~ 11660942 (+) True LOC122354243
TU119513 other upstream 331023 11528734 ~ 11529636 (+) False eif4a3
TU119512 other upstream 333617 11525059 ~ 11527042 (+) True rpl37a
TU120138 other downstream 324231 12192754 ~ 12225492 (+) False G81213
TU120140 other downstream 338232 12206755 ~ 12225492 (+) False G81213
TU120139 other downstream 342429 12210952 ~ 12225492 (+) False G81213
TU120226 other downstream 714392 12582915 ~ 12585641 (+) True G81268
TU120348 other downstream 831537 12700060 ~ 12700884 (+) True G81364

Expression Profile