RNA id: TU120092


Basic Information

Item Value
RNA id TU120092
length 1540
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G81174
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11939282 ~ 11940885 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGATACCTGGGTGACAGTCCCCCGTGAGAGCCGTTGGTGGGTGAGGTCAGCGGGCTGCTGCGGGTCCCTGGGGGCCGCGGAGGGGTCCGTCCCGCGCCGCTGGGAGACGCCTGGGACTGAACAAACCACACAGACCTAAACacggctgtgtgtgtgagccgAAGACGCTAAGGTGTCTGCCACACGTTTCTTAAGGGGTTTTCAGAATAAAATGTCCGACTTCGGTTGGAAGAGCGTTACATCGTCATGGTATTCATGTAGAAGtgtaaagactttttaaaacacataaaagaataaggaagcatattCGATTCGATTgcgttttaaatcatttaaaacacctTACTGAcaagcataaaatataaaattacaactaattagtatttggggtgaaagtaatgAAATCTTATAATCTAATGTGTCCTAAATAATGCCTGACAACACCGTTacactttttactgttttttttttttttttttaagtgcaatgtgtaataattcagtttttttttttttttttataatactacttgaattaatttattttttatttatatccaGTAAATGTTTAGTAATTCATGTAATATTTggtgtgtaatattttaaagcttttgtgttttaaaataacactgtttgggttgcatttatttttactgattgCTAGTTAAAACTAGTCATTTTTTTGTCCTGTCATGTCTtctcattattaattattcttatttaatttatataatattatataaacaatcaGGGAAAACGTATGATATTTTGTtcttaaaattgcaattaatttaaacagaaaacgttttaatttagttttagggGGAAAGACAGTTCATAAGACTGCAGTGAAATTTGTTAATTCTTTTCTAACGGTGTGGATCAATTTATCATACAATTATTCatacaataacacaataatCAACGCCTAGCGCTCTTATGAAGTTAAAAAGGTTAActactaaaactaaatgaaatagcCAATTGTATTATTGCGTTTGTCTTACTGTTTCTGCGCTCTCTAAACATTATTGCCGGGGTTGCCAGATATTGGCGTGGTAACGAACAAAGGCAAgcccccaaaaataaaacgaaCTAAGCTCTAAACATTTAGATAGAGATATGGCTAGCCATGCAACTTTATTAAActcctagaaaaaaaaaggagatgCTTATAATAAGTGGATCTGGCAACACCCGGGCCTTTTAAATGGCCGCTTAGAAAGCGTGTGTGTACCACTGCTGCTGCGTTACTGCTGTTCTTCAGATGGTTGTGCAGGAGTTTAGTGGCTCCGTCCTGGAAGGTTTTGGGCAGGGCTCCTAACAGCATGGTGAACTCTGGGGTGTTCAGCTCAAACAGGGCGATCAGAACCATCTGAGCAGCCTGGAAACACACAGCCAGCGCAAAACATGACGTACCGACCCCGAAGGAGCCCCGTGACTGTGAGGGACGGACGTTTAGATCGCACGCCGGTTTTTGAGCATTTGCAAAAATGACTTGTCTTTTCATTGAGCATCGTTCCAGTGAATCTTAATCAAAC

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120089 lncRNA downstream 854 11934065 ~ 11938428 (-) True G81171
TU120064 lncRNA downstream 61633 11875488 ~ 11877649 (-) True G81158
TU119981 lncRNA downstream 152294 11784280 ~ 11786988 (-) True G81097
TU119933 lncRNA downstream 173211 11736379 ~ 11766071 (-) False G81057
TU120166 lncRNA upstream 293514 12234399 ~ 12234936 (-) True G81233
TU120169 lncRNA upstream 294717 12235602 ~ 12236175 (-) True G81235
TU120171 lncRNA upstream 296924 12237809 ~ 12238334 (-) True G81237
TU120253 lncRNA upstream 429655 12370540 ~ 12372623 (-) True G81295
TU120304 lncRNA upstream 542358 12483243 ~ 12523584 (-) True G81327
XM_043251753.1 mRNA downstream 47090 11884558 ~ 11892192 (-) False traf3ip2b
XM_043251752.1 mRNA downstream 47092 11884558 ~ 11892190 (-) True traf3ip2b
XM_043251762.1 mRNA downstream 80127 11856339 ~ 11859155 (-) True LOC122353870
XM_043251754.1 mRNA downstream 116491 11812570 ~ 11822791 (-) True gnb4b
XM_043251741.1 mRNA downstream 158474 11766831 ~ 11780808 (-) False ero1b
XM_043251728.1 mRNA upstream 41551 11982436 ~ 12059316 (-) True gli2b
XM_043251750.1 mRNA upstream 209851 12150736 ~ 12161843 (-) True LOC122353860
XM_043251771.1 mRNA upstream 228583 12169468 ~ 12171898 (-) True LOC122353880
XM_043251755.1 mRNA upstream 404654 12345539 ~ 12347685 (-) True foxg1b
XM_043251731.1 mRNA upstream 636134 12577019 ~ 12594787 (-) True tdrd3
XR_006252156.1 other downstream 38184 11900968 ~ 11901098 (-) True LOC122354705
XR_006252062.1 other downstream 158473 11766831 ~ 11780809 (-) False ero1b
TU119760 other downstream 519952 11403644 ~ 11419330 (-) True G80956
TU119843 other downstream 544406 11393360 ~ 11394876 (-) False LOC122354635
TU119776 other downstream 653993 11263332 ~ 11285289 (-) True mafgb
TU120112 other upstream 132711 12073596 ~ 12074075 (-) True G81192
TU120285 other upstream 504975 12445860 ~ 12447287 (-) True G81318
TU120624 other upstream 877237 12818122 ~ 13057881 (-) False G81512
TU120651 other upstream 949396 12890281 ~ 12896130 (-) False G81523
TU120652 other upstream 951708 12892593 ~ 12896130 (-) True G81523

Expression Profile