RNA id: TU120169



Basic Information


Item Value
RNA id TU120169
length 574
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G81235
representative True

Chromosome Information


Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 12235602 ~ 12236175 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ACGAAAACCACTGCGGCGTGTCGTTTTAGGCcgataaataaaaagaaaacgatCTAGAGCAATAgtgtgcagcagcagcaggtatgaaaacatgaaatgctgttataataagaataacaaTTATTACAGAAATTAGTCCGGATGCTCAAAAACAGACTAGTTCATGAAACGCCAGCAGTGATGGTTATTAGATTGAAACGATTAACACTCATTTATACGTCTCTCTTCACCCGACTAAAGTCTGTAATACACTGCGAAACAAAACTGGTTTGTACATCAGATCTGTACATGTTGTCGACACGCATGCATTTAATCCATTAAAGGTCAGTTTTCTGTAAGAAAACAAATGGGTTTCTGTTTTATATTGACAATATGCCACTCTAAAACATGATCGGCTCCATTAGAAACCTCTCAGACTGGGATTCCCATCAGTTCGAGGCGAGTCTCGTGTATCGTCGTCAGATTCGGAGAAGAATAGCTTCtactgtagtgaatgggtgccgtcagaataagagccGATAAAACAACAATCCAGTCCGTCACTTCCCGTCTGGAGAAGACTGTTTGTATCAgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU120166 lncRNA downstream 666 12234399 ~ 12234936 (-) True G81233
TU120083 lncRNA downstream 280532 11898871 ~ 11955070 (-) True G81165
TU120092 lncRNA downstream 294717 11939282 ~ 11940885 (-) True G81174
TU120089 lncRNA downstream 297174 11934065 ~ 11938428 (-) True G81171
TU120064 lncRNA downstream 357953 11875488 ~ 11877649 (-) True G81158
TU120171 lncRNA upstream 1634 12237809 ~ 12238334 (-) True G81237
TU120253 lncRNA upstream 134365 12370540 ~ 12372623 (-) True G81295
TU120304 lncRNA upstream 247068 12483243 ~ 12523584 (-) True G81327
TU120307 lncRNA upstream 256929 12493104 ~ 12493941 (-) True G81330
TU120326 lncRNA upstream 298775 12534950 ~ 12535426 (-) True G81349
XM_043251771.1 mRNA downstream 63704 12169468 ~ 12171898 (-) True LOC122353880
XM_043251750.1 mRNA downstream 73759 12150736 ~ 12161843 (-) True LOC122353860
XM_043251728.1 mRNA downstream 176286 11982436 ~ 12059316 (-) True gli2b
XM_043251753.1 mRNA downstream 343410 11884558 ~ 11892192 (-) False traf3ip2b
XM_043251755.1 mRNA upstream 109364 12345539 ~ 12347685 (-) True foxg1b
XM_043251731.1 mRNA upstream 340844 12577019 ~ 12594787 (-) True tdrd3
XM_043251763.1 mRNA upstream 367491 12603666 ~ 12604703 (-) True LOC122353872
XM_043251778.1 mRNA upstream 371061 12607236 ~ 12609732 (-) True zgc:194981
XM_043251734.1 mRNA upstream 376649 12612824 ~ 12659684 (-) True il17rd
TU120112 other downstream 161527 12073596 ~ 12074075 (-) True G81192
XR_006252156.1 other downstream 334504 11900968 ~ 11901098 (-) True LOC122354705
XR_006252062.1 other downstream 454793 11766831 ~ 11780809 (-) False ero1b
TU119760 other downstream 816272 11403644 ~ 11419330 (-) True G80956
TU119843 other downstream 840726 11393360 ~ 11394876 (-) False LOC122354635
TU120285 other upstream 209685 12445860 ~ 12447287 (-) True G81318
TU120624 other upstream 581947 12818122 ~ 13057881 (-) False G81512
TU120651 other upstream 654106 12890281 ~ 12896130 (-) False G81523
TU120652 other upstream 656418 12892593 ~ 12896130 (-) True G81523
XR_006252063.1 other upstream 720686 12956861 ~ 12965633 (-) False LOC122353859

Expression Profile