RNA id: TU120171


Basic Information

Item Value
RNA id TU120171
length 526
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G81237
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 12237809 ~ 12238334 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGGGGAGCCCAAACCCCCGGGCCAGTAATGCAGGCAAGCAACAGCCATGACAACAAATCAGACGAAAACCCCTAAATTgactagaaatgtttttttaacttgacaGCTAATCATCTAATGGTGTTTATTTGTGGTAGAAAAGGTGAAACCTTACAGAACTGTAGAGTATAGAACagtaactgtaataataataatagttaataaaataaaaatcatgtgaCTGGCACATAGACCTGAAGGgggaaacatttatttacttttttttttgaatggctGCAcaggtaaataataataataataataataataatactccacttttttttggaaatctgtTCATTCTCCAACTCACCCAGAGTTAATAAATCTTTGCATCTGGCAATAGCACTTTCAGcacagcttagcatagatcattgaatccaattagatcAGTAGCAtcatgttcaaaaatgaccaaagagtatCACCACGGCTTTTCTCTCTCTACACCTCTAAAGACCCCTCTGTCAAACCCCTGATGTGTGC

Function

GO:

id name namespace
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120169 lncRNA downstream 1634 12235602 ~ 12236175 (-) True G81235
TU120166 lncRNA downstream 2873 12234399 ~ 12234936 (-) True G81233
TU120083 lncRNA downstream 282739 11898871 ~ 11955070 (-) True G81165
TU120092 lncRNA downstream 296924 11939282 ~ 11940885 (-) True G81174
TU120089 lncRNA downstream 299381 11934065 ~ 11938428 (-) True G81171
TU120253 lncRNA upstream 132206 12370540 ~ 12372623 (-) True G81295
TU120304 lncRNA upstream 244909 12483243 ~ 12523584 (-) True G81327
TU120307 lncRNA upstream 254770 12493104 ~ 12493941 (-) True G81330
TU120326 lncRNA upstream 296616 12534950 ~ 12535426 (-) True G81349
TU120327 lncRNA upstream 329775 12568109 ~ 12568309 (-) True G81350
XM_043251771.1 mRNA downstream 65911 12169468 ~ 12171898 (-) True LOC122353880
XM_043251750.1 mRNA downstream 75966 12150736 ~ 12161843 (-) True LOC122353860
XM_043251728.1 mRNA downstream 178493 11982436 ~ 12059316 (-) True gli2b
XM_043251753.1 mRNA downstream 345617 11884558 ~ 11892192 (-) False traf3ip2b
XM_043251755.1 mRNA upstream 107205 12345539 ~ 12347685 (-) True foxg1b
XM_043251731.1 mRNA upstream 338685 12577019 ~ 12594787 (-) True tdrd3
XM_043251763.1 mRNA upstream 365332 12603666 ~ 12604703 (-) True LOC122353872
XM_043251778.1 mRNA upstream 368902 12607236 ~ 12609732 (-) True zgc:194981
XM_043251734.1 mRNA upstream 374490 12612824 ~ 12659684 (-) True il17rd
TU120112 other downstream 163734 12073596 ~ 12074075 (-) True G81192
XR_006252156.1 other downstream 336711 11900968 ~ 11901098 (-) True LOC122354705
XR_006252062.1 other downstream 457000 11766831 ~ 11780809 (-) False ero1b
TU119760 other downstream 818479 11403644 ~ 11419330 (-) True G80956
TU119843 other downstream 842933 11393360 ~ 11394876 (-) False LOC122354635
TU120285 other upstream 207526 12445860 ~ 12447287 (-) True G81318
TU120624 other upstream 579788 12818122 ~ 13057881 (-) False G81512
TU120651 other upstream 651947 12890281 ~ 12896130 (-) False G81523
TU120652 other upstream 654259 12892593 ~ 12896130 (-) True G81523
XR_006252063.1 other upstream 718527 12956861 ~ 12965633 (-) False LOC122353859

Expression Profile