RNA id: TU120174


Basic Information

Item Value
RNA id TU120174
length 369
lncRNA type intronic
GC content 0.60
exon number 2
gene id G81238
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 12238470 ~ 12239245 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGGTTGGGAGTCCTCCGCCTTAAACAGGCTTGTGGCGGAACCGAAGGAAAAGGGTTTGGGGTCCTCCGCCTTAAACAGGCTTGTGGCGGAACCGAAGGGAAGGGGTTTGGGGTCCTCCGTCTTAAACAGGCTTGTGGCGGAACCGAAGAGAAGGGTTGGGGTCCTCCGCCTTAAACAGGCTTGTGGCGGAACCGAAGGGAAGGGGTTGGGGTCCTCCGCCTTAAACAGGCTTGTGGCGGAACCGAAGGGAAGGGTTTAGGGTCCTCCGCCTTAAACAGGCTTGTGGCGGAACCGAAGGGAAGGGGTTTAGGGTCCTCCGCCTTAAACAGGCTTGTGGCGGAACCGAGAGGGAAGGGGTTGGGGGTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120170 lncRNA upstream 114 12237818 ~ 12238356 (+) True G81236
TU120168 lncRNA upstream 2293 12235192 ~ 12236177 (+) True G81234
TU120167 lncRNA upstream 2293 12235588 ~ 12236177 (+) False G81234
TU120141 lncRNA upstream 12978 12205168 ~ 12225492 (+) True G81213
TU120014 lncRNA upstream 381151 11851045 ~ 11857319 (+) False shroom2b
TU120177 lncRNA downstream 286 12239531 ~ 12239751 (+) True G81240
TU120178 lncRNA downstream 888 12240133 ~ 12240391 (+) True G81241
XR_006252066.1 lncRNA downstream 126414 12365659 ~ 12372611 (+) True LOC122353894
XR_006252065.1 lncRNA downstream 126418 12365663 ~ 12372611 (+) False LOC122353894
TU120189 lncRNA downstream 127647 12366892 ~ 12371399 (+) False LOC122353894
XM_043251766.1 mRNA upstream 72128 12162078 ~ 12166342 (+) False LOC122353874
XM_043251765.1 mRNA upstream 72128 12162089 ~ 12166342 (+) True LOC122353874
XM_043251713.1 mRNA upstream 283399 11893348 ~ 11955071 (+) True LOC122353838
XM_043251714.1 mRNA upstream 283399 11893348 ~ 11955071 (+) False LOC122353838
XM_043251715.1 mRNA upstream 283399 11893348 ~ 11955071 (+) False LOC122353838
XM_043251777.1 mRNA downstream 108410 12347655 ~ 12364409 (+) False acyp2
XM_043251776.1 mRNA downstream 116083 12355328 ~ 12364409 (+) True acyp2
XM_043251710.1 mRNA downstream 135868 12375113 ~ 12466443 (+) True sptbn1
XM_043251711.1 mRNA downstream 233474 12472719 ~ 12523419 (+) True eml6
XM_043251712.1 mRNA downstream 233474 12472719 ~ 12523419 (+) False eml6
TU120138 other upstream 12978 12192754 ~ 12225492 (+) False G81213
TU120140 other upstream 12978 12206755 ~ 12225492 (+) False G81213
TU120139 other upstream 12978 12210952 ~ 12225492 (+) False G81213
TU120019 other upstream 375358 11860942 ~ 11863112 (+) False LOC122353892
TU119601 other upstream 538256 11698364 ~ 11700214 (+) False tomm20b
TU120226 other downstream 343670 12582915 ~ 12585641 (+) True G81268
TU120348 other downstream 460815 12700060 ~ 12700884 (+) True G81364
TU120409 other downstream 574813 12814058 ~ 12820186 (+) False slmapa
TU120439 other downstream 636268 12875513 ~ 12879098 (+) False G81416
TU120440 other downstream 636268 12875513 ~ 12879098 (+) True G81416

Expression Profile