RNA id: XM_043251780.1


Basic Information

Item Value
RNA id XM_043251780.1
length 5690
RNA type mRNA
GC content 0.49
exon number 29
gene id slmapa
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 12768207 ~ 13057220 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCGGTGGTGCTCGAGCCCCGCGGCGGTTTGTggccggtgtgtgtgtgtgtgtgtttctctcttcaGGAGGACGACTTACTTCCAATTATCCTCTCGCACACAACGATTTTTCCTCCCGTTTTCAGAGTCCCCGGGAGCCGAGACCTCCACGGCCTACCGCGGGACCGTGTCACGGACTTTATTCGCCCGCGAGTTTCTTTTCTGGGGAATTTATCGCGTCCCTCGGCGAGCTAAGCTAGGCATCGAGCTCCCGAGCTAATACTGGATTTGCGCAAATTCTCCGCGCACGAAAGTTGCACAGAGGAACAAATAACTTCTTTCTCCCGGATAAATTCACTCGGAATTACCTCTGAAGTCTTTTTCGGTCCGGAGGGCTTGATGAGAAGAAGATAAAGGCCACCGTTACCTCAGCGAAGCTAACGCGCTAATATGAAGTTAGCCAGCTAACGCTGTGGTACGCAAGAAAACACCCTCCGCGGGAGCGCTGTATAACGCTTACATGGTTTTGACAGTTAAAAGCTTGCAAATGTCGGGCTGATTAGGTTTTTGAGCTTTTGTTGTCGTAGTGAAACGTTTATCTGTCTTGGGGAGTGGTGGCTTGACGATATGTCCTGCATACTTCATCCAAACCCACTCGCGATATTAATCTTCATTAGGGTTTAACATTTGCATCAGTGCCCGTTAATACAGAAGTCGTTGCCTGTTAATCTAGAAACGCATGTCACACGGCGAGCAGTCTTATTTCTGCGGGGAGTATAGATTAGCTGGTCCAACAGGTTACTAACGTTATATATTAGCGTTACTGGCTTGTTTTTTTGATCAGGCCTATGGTTGTGAAGGGGGATGAGGATGAATTGTGTAGGGAACGAGGTGTAACGGGTCAAGTTGTGGACTGTCATCTTAAAAAACTGATTTGTATGGAATTGGGCAGCTGGTTTGGCATCATGGGGGTCTCGCAAGGGGTCATGAAGTCGTCTACATAGTGTCTAACTAGTCATTTCGACGTTATGTAGTCGGTCAGCAGGAGAGCTCTGTCTTTTCTTAAAGTTTTTCGTGTTGCTATGTGCGTTGTTCTCCTGCTAATTCGTTAAAAAGATCGGAGAGTTGGAGCAAAGGGCCAGTCTGGATCAAGAAACCCTGTCTTTCGTCTCTGGTTGGAGTAGCACTCCCAAGCCATCCTCAATGCCTTCAGCGCTGGCCGTGTTCACCTGCCGCCCGAATTCCCACCCGTTTCAGGAACGCCACGTCTACCTGGATGAGCCGGTCAAGATCGGGCGCTCCGTGGCCCGGTGTCGCCCTGCCCAGAACAACGCCACCTTCGACTGCAAGGTGTTGTCCAGGAATCACGCTCTGGTGTGGTTCGACCACAAGACAGGAAAGTTCTATCTGCAGGACACCAAAAGCAGCAATGGCACCTTCATCAACAGCCAGCGTCTGAGCCGAGGGTCGGAGGAGAGTCCTCCCTGTGAGGTGCTCTCCGGGGACATCATTCAGTTTGGGGTGGATGTGACGGAGAACACCCGGAAAGTCACTCATGGCTGTATAGTGTCGACCATCAAGCTCTTCTTACCAGATGGCATGGAAGCTCGGCGGCGATCAGAtGTTGTTCCAGCACCGCTGCCACTGGCTATTGATAAGGTGTCCGCAAATACCCCCAGCATGTATTCTCAGGAACTGTTTCAGCTCTCCCAGTACCTGCAGGAGGCCTTACACAGAGAGCAGATGCTGGAGCAGAAGCTGGCCACTTTACAGAGGCTGCTGGCCAGCACACAGGAAGCATCAGAGAGCAGCTGGCAGGCTTTAATCGATGAAGACCGGTTGCTCTCTAGATTGGAGGTGATGGGGAATCAGTTGCAAGCATATTCGAAAAACCAAACAGAAGACGGTATCCGAAAGGAGCTTGTAGCCTTAACGGAGGACAAACACAATTACGAGACGACAGCCAAAGAGTCCCTGAGGCGGGTCCTTCAGGAGAAAATCGAGGTGGTCAGGAAGCTGTCGGAGGTGGAGAGGAGTTTGAGTAACACAGAGGACGAGTGCACACACCTGAGAGAGATGAACGAACGCACGCAAGAGGAGCTCAGAGAACTCGCCAACAAATACAACGGAGCAGTCAATGAAATTAAGGATCTCACCGAAAAGATCAAGTTGGCAGAGGGCAAACATGAGGAGCTCACTCAGAAAGGCCTGAGTGAGAAGAAAGAGCTACAGCTGAAGATCGAAGAGATGGAGGAGAAAGAGCAGGCGCTTCAAGCTCGAATCGAAGCTCTGCAGGCGGACAACGACTTCACGAATGAGAGACTAACGGCCCTGCAAGTCCGGTTAGAACAGCTGCAGGAGAAAAGCATAAAGGAAAACAACAGTTTAGACCACTTTCTTTTAAAGAGTGGAGGAGACTGCACTTTAATCCAACAGTACATTGAGTGTCAATcgGTGAGGCAGCTGAAGGAAGCGGTGGACTCATCCATTAACAAGCTGTCCAACTTTGACGAAGTCATTGATGCACATCTTCAGAATAACCAGACGACCGTGGACAACAGCTTGCCCAGTCCAGACAGGCTTAAAGAAAACCAAATAGACGCTAAAGAGTGTGATATGTCAGATACTCTGAGCCCCAGCAAGGACAAAAGCAGTGACGACACGTCAGacggacagatggatgaaCAAGAACTGAATGAGCCCCAGAACAGGGTTTCTCTTCTGAAAGaaATGGACAGGAACCTGGAAGCTGGAGACACTGAGCAGGTCATTCCCCACCTCCACCGAGAGCTGCAGGAGGCCCAGGAGCTCGCCAACACCGGCAAACAGAAATGCCTCGAGCTGCAAGCCCtgctggaggaggagaggagaacCAACAGACAGCAGACTGAAGAATCTGCTAAACAGATCCGCTTCTTACAGACTCAACTGGCGAAGCTCCAGTCTGATATGGAGGCTTTGCGCGTGCAGAGAGAAAACACCATCACCACCACCCGTGAGGAGCTCTACAACGCAGAGGAGATCCTGGTGCTCCGGCACGCCATGGAGGCCGCCACGCGAGCGCGAGAGATCGCCGCCCTGCAGGGAGACCTGAGCGTCGTCACCGCCGAACTGGACAAGTGGAGACAGACGGCAGCCAAGTATGAAGTGGAGATCAGCAACCTGCAGGCCAGCTTCCAGCTCCAGAGCCAGCACCAGGAAAGAGCTAGTCGGCTCCAAGGTGAATTGGAGAAGCTTCAGGGCGAGTGCTCCAGTCTGCAGAATGAGTGTGACGGTCTGCGGGCCGAGAAGACGGCCCTGAAGCAGAAGCTCCACAGACTAGAGGAAGAGCTCGACAGCTCCAGAGAGAGCGCGACGTTGAGCAGCAACCTGAACGCTTTGGAGAAATCAGGCGACCTGGAGAATAAACTGGGCTCAATACAAGACCAGCACCTGCAGGATGCTAGCAAGCTGAAGATCCAGCTGGCTCGCGAAGGTCGCACCAGAGACCTGCAGAAAGAGTACGACGACACTCAGAACCTGCTGTCAGATCTGCGTCAGAGGTATGAGCAGACGGAGCAGGAGAAACGCTCCATCAACGACGAGCTTGAACAGTGCAAGGTCAACCTCAAACTCCTGCAGGAGAAGGGCAGCAATAGCGGATGGATGCCCTGGATGCCGGTGGTCGCCGCCGTGGTTGCCGTGACAGCAGTGGTGCTTTACCCCAACTTGTCCAAGAGCTCCTCTtgagaaccaatcagaacactcATCTCTACCACTTCCTGTTCCCAGCACGACCCTCTGTCCAATCCCAACGTTCGGCCTAAACCCCGAACGCGTTACCTCTCGTTTTCGACAATATGGCCCCACGTCtgtgtaaaatgcaaatgtatatagtatagaaagaaagagggaataAAGTTGTAACGCATATTATAGAATAAATAATCTATCGGCATTTCTTTTGCTCACTCGGATGGGaattttgatgattaaaatGGCCTAAACTAGGTCTTCGCTTTCGTTTTCTTGAACGGGTGCCGCGTTTTCTCTTAGCAAGCTTTCGTTTTTTTCTGATTGTGGTTTGCCATCTCAGATGTGGTACAGCCAAATGAGGATCTGAACTCTAGGGCACAGAGGGGCGAAGTGCCTACTTTAAATACTACTAGGACTAGTTCACATTCAAGTGCCACTCACGCAGCGTCTCATCAATTCGAACGCTTAAAAAAGTCGTCGTCTCAATTTTCACGTCTGTGCTGTTATTGTGCGTTCGAGCCGACATGCTTCTAGCACAGTGATGTCTCGTTCTCTGTGGCTGTTTCTCTTGTGTCATGTATTATAAGCAAAACGTTCACGTCGGAGACACTACAAGCATCCAGCTGATTTTGAAATTCGATGTGTCAGGATTGCGCTCGCGCCAAAAAGGATTGTAGCTTTTTACCAAGACACTGTCCTGCTGTTCGGACTGAGATGCGGAGCACTTTGAGTTCGTCTCCTACAGTACCTCCTGATAAAGGCTCGGGGATTTTGCTGCCTTACGTGTTACATAGGTTACTTTTTACGGAGGATGCGAAGAGTTTCAAATGAATGGGGAAGGTTTGTTCTCGGGCGAGGGCCAATCGGTTCGAGGGAAGACGAATTAACCAATGATGTGTTTGGTGTGTGGTTCACGTTTGTCTGCCGTGCTGTAAATAAACCGTcgtggagcaaaaaaaaaaagccgttTCAACGCGTCGAGGACTTCGTTTTTGCATCTTTTCGTTTCGTTTCAGCCGCAACAGAAATCCACCGAACGCTTCGACGTGGATTCGACCgcgaatgcaaaaaaaaaaaaaaaagcaaaaaaaaagcaaagctagCACAGAAAAAGGATAGCTTTAAACGGATCTCTTGCATCGAAAACgtttttgggttgtttttttggtctttaagcatgagtttttttaatttcctaaaTCCGCTTGGGACATCGTCCTACACGTCGGAAGAATGCTCACAGGCCGtctgtaaatatgtatgtatgaatgtttgtgtgtaaatatgttaTAGTCACGAAATAAACATCGGATATAAATGATCTCGGTCACGTCTAATTTGCTGCTGAAGCCGGTTTTTAGGATATGATGCGTTGGCCGTTTCCTGTTCTTTAAATTGAGATGAAAGtcaagtttagtttagttttgtagATGCGTTTCTACCTTCGTTTCGGCTCGGAAACATGCAGTTcttgcaaaaacaaaattaaaatattgcttttaagTTGTGGAACTCGTTAACGATAGCAAAGATTGGAAGGAAGGAGTAGACGTAAGTTTAAACGGGTCGTAGCTGAACCTATCAAGGCTGGTTTTCTGCAAGCATACAGTTTGTGTTTTGGTTTCTCTGTCGGTTGACAGCGGTGGAATAAAGTTTCTCGCGTCTCGGCTAAACCTAGGCCTTTATGGAAAAAGATCTCTTTAAGCTGGTCACCAACCAAGTCCGTACAGTACAGCACACtgcctgtatatatttttagtccTAAATATTGCTTTCGAGGGGGTTTTTCTTGAACCGAGAGCTCGgagtcacacttttttttttttttgtttggttttgaacGTCAAAGATAAGTTCAATGtcgaaattatattttgtaaagacATACAACGATATAACGGTTTCTGGAATACAGAAAGGGTATTTGCACTAACAAGTGTGATGTGCATGACTTCAATAAAACGACTTCACTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120397 lncRNA upstream 40972 12725794 ~ 12727235 (+) True G81393
TU120351 lncRNA upstream 67323 12669789 ~ 12700884 (+) False G81364
TU120448 lncRNA downstream 21761 12841957 ~ 12870111 (+) False LOC122353861
TU120451 lncRNA downstream 45783 12865979 ~ 12924171 (+) True G81420
TU120447 lncRNA downstream 47489 12867685 ~ 12870111 (+) False LOC122353861
TU120449 lncRNA downstream 47489 12867685 ~ 12870111 (+) False LOC122353861
TU120452 lncRNA downstream 67214 12887410 ~ 12889883 (+) True G81421
XM_043251770.1 mRNA upstream 30567 12732754 ~ 12737640 (+) True LOC122353879
XM_043251739.1 mRNA upstream 48342 12715876 ~ 12719865 (+) True pde12
XM_043251756.1 mRNA upstream 53276 12702307 ~ 12714931 (+) True atp6ap1la
XM_043251761.1 mRNA upstream 155677 12609912 ~ 12612530 (+) True si:ch73-106k19.2
XM_043251764.1 mRNA upstream 165367 12601083 ~ 12602840 (+) True LOC122353873
XM_043251709.1 mRNA downstream 4734 12824930 ~ 13158870 (+) True LOC122353835
XM_043251732.1 mRNA downstream 107134 12927330 ~ 12955366 (+) True LOC122353848
XM_043251782.1 mRNA downstream 214441 13034637 ~ 13055876 (+) True LOC122353891
XM_043251548.1 mRNA downstream 339946 13160142 ~ 13161913 (+) True LOC122353677
XM_043252484.1 mRNA downstream 344565 13164761 ~ 13210431 (+) True arid3a
TU120348 other upstream 67323 12700060 ~ 12700884 (+) True G81364
TU120226 other upstream 182566 12582915 ~ 12585641 (+) True G81268
TU120138 other upstream 542715 12192754 ~ 12225492 (+) False G81213
TU120439 other downstream 55317 12875513 ~ 12879098 (+) False G81416
TU120440 other downstream 55317 12875513 ~ 12879098 (+) True G81416
TU120442 other downstream 55317 12875513 ~ 12879313 (+) False G81416
XR_006252101.1 other downstream 344565 13164761 ~ 13210690 (+) False arid3a
TU120480 other downstream 408747 13228943 ~ 13231092 (+) True G81434

Expression Profile