RNA id: TU120447



Basic Information


Item Value
RNA id TU120447
length 496
lncRNA type read_through
GC content 0.58
exon number 3
gene id LOC122353861
representative False

Chromosome Information


Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11752545 ~ 12870121 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


tgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcagggcaCGTCTGTGTGTCAGGTGACCCTGATCGGGCTGACGGTGGTCCTGCTGTACTCGTCCCGGGCCTGTTATAATCTGGTGGTCCTGGCTCTGACCGACATCGAGAGCATCAACTCGTTCGATTACGACTGGTACAACGTCTCCGATCAGGCGGATCTGCGCTCCAGTCTCGGAGACGCCGGCTACGTGGTGTTCGGGGTCATCCTGTTCGTCTGGGAGCTGCTGCCCACGTCTCTGGTGGTCTTCTTCTTCCGCGTGAGGAAACCGGCGCAGGACCGGAGCGGCTCTTCCATTCCCAGCCACGTCTTCTCAAACCGCCCGTACTTCTTCGACAATCCCAGGCGCTACGACAGCGACGACGACCTGGCCTGGGCTTCTCACCCCGTGACCACCTCCACCAGGTACACAAACACCACTGACCATCACACTTAGAGATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU120397 lncRNA upstream 140450 12725794 ~ 12727235 (+) True G81393
TU120351 lncRNA upstream 166801 12669789 ~ 12700884 (+) False G81364
TU120452 lncRNA downstream 17299 12887410 ~ 12889883 (+) True G81421
TU120453 lncRNA downstream 19855 12889966 ~ 12896107 (+) True G81422
TU120457 lncRNA downstream 95660 12965771 ~ 12972403 (+) False G81424
TU120458 lncRNA downstream 95660 12965771 ~ 12976155 (+) True G81424
XR_006252067.1 lncRNA downstream 107478 12977589 ~ 13019135 (+) True LOC122353896
XM_043251780.1 mRNA upstream 47489 12768207 ~ 12820196 (+) True slmapa
XM_043251770.1 mRNA upstream 130045 12732754 ~ 12737640 (+) True LOC122353879
XM_043251739.1 mRNA upstream 147820 12715876 ~ 12719865 (+) True pde12
XM_043251756.1 mRNA upstream 152754 12702307 ~ 12714931 (+) True atp6ap1la
XM_043251761.1 mRNA upstream 255155 12609912 ~ 12612530 (+) True si:ch73-106k19.2
XM_043251732.1 mRNA downstream 57219 12927330 ~ 12955366 (+) True LOC122353848
XM_043251782.1 mRNA downstream 164526 13034637 ~ 13055876 (+) True LOC122353891
XM_043251548.1 mRNA downstream 290031 13160142 ~ 13161913 (+) True LOC122353677
XM_043252484.1 mRNA downstream 294650 13164761 ~ 13210431 (+) True arid3a
XM_043252485.1 mRNA downstream 295012 13165123 ~ 13210431 (+) False arid3a
TU120409 other upstream 47499 12814058 ~ 12820186 (+) False slmapa
TU120348 other upstream 166801 12700060 ~ 12700884 (+) True G81364
TU120226 other upstream 282044 12582915 ~ 12585641 (+) True G81268
TU120140 other upstream 642193 12206755 ~ 12225492 (+) False G81213
TU120439 other downstream 5402 12875513 ~ 12879098 (+) False G81416
TU120440 other downstream 5402 12875513 ~ 12879098 (+) True G81416
TU120442 other downstream 5402 12875513 ~ 12879313 (+) False G81416
XR_006252101.1 other downstream 294650 13164761 ~ 13210690 (+) False arid3a
TU120480 other downstream 358832 13228943 ~ 13231092 (+) True G81434

Expression Profile