RNA id: XM_043251751.1


Basic Information

Item Value
RNA id XM_043251751.1
length 1316
RNA type mRNA
GC content 0.59
exon number 7
gene id LOC122353861
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11752545 ~ 12870121 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGTGGACGGTGATGAACTGTAGAGGTGTGAGGGGTTCATTCAGGGAGGAGTTcatggaggaggtggaggagccTCGGGAATCATTTACATTACTGCGGAGATTTGAACCCTCGCGACAAAAGAGCCAATCAGCTTCTCCGGATGCCGATCACATgctccctcctctctcctcaCGACTGCAGACGGAGCAGCAGCGCCGGGGCTGATGGGAAGGCTCTGACGGACGCAGACATGCAGGGATGGTCGGGAGCGAACGGCTCCGTGTCTCCTCCGACGCTGAGCCCCAGCATCCCTCCGTTCGTGAAGCTGGGCCTGACTCTGGCCTACACCGTCTTCTACTCGCTGCTCTTCTGCTTCATCTACGCCCAGCTCTGGCTGGTGCTGCGCTACAGACACAAGCGCTTCAGCTACCAGACGGCGTTCCTGTTCCTGTGCCTGCTGTGGGCGGCTCTCCGAGCGCTGCTCTTCTCCTTCTACTTCAGGGACTGCGTGACGGCCAACGCTCTCGGACCCTTCTCCTTCTGGCTGCTCTACTGCTTCCCCGTCTGCCTGCAGTTCTTCACGCTCAGCCTCATGAACCTGTACTGCGCTCAGGTTTTCTTCAAGGCCAAGTCGAAGTACTCTCCTCAGCTCCTTAAATATAAGTCTCCTCTCTACCTGCTGTTCTTCGGTGTGAGTCTGCTCTTTCTTCTGGTCAATCTGAGCTGTGCTCTGCTGGTCAAGATGAGTCAGGCTCAGGTCAAGACCGTGGTTCTGGTGCGAGTGACCATCAACGACTCGCTCTTCGTCCTCTGCGCCGTCTCGCTGGCCGTCTGCCTCTACAAGATCGCCAAGATGTCCCTCGCCAGCATCTACCTGGAGTCCAAGggcaCGTCTGTGTGTCAGGTGACCCTGATCGGGCTGACGGTGGTCCTGCTGTACTCGTCCCGGGCCTGTTATAATCTGGTGGTCCTGGCTCTGACCGACATCGAGAGCATCAACTCGTTCGATTACGACTGGTACAACGTCTCCGATCAGGCGGATCTGCGCTCCAGTCTCGGAGACGCCGGCTACGTGGTGTTCGGGGTCATCCTGTTCGTCTGGGAGCTGCTGCCCACGTCTCTGGTGGTCTTCTTCTTCCGCGTGAGGAAACCGGCGCAGGACCGGAGCGGCTCTTCCATTCCCAGCCACGTCTTCTCAAACCGCCCGTACTTCTTCGACAATCCCAGGCGCTACGACAGCGACGACGACCTGGCCTGGGCTTCTCACCCCGTGACCACCTCCACCAGGTACACAAACACCACTGACCATCACACTTAGAGATAGCAGCCGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119599 lncRNA upstream 58092 11690440 ~ 11694453 (+) True G80865
TU119595 lncRNA upstream 68601 11683460 ~ 11683944 (+) True G80861
TU119594 lncRNA upstream 69301 11682924 ~ 11683244 (+) True G80860
XR_006252094.1 lncRNA upstream 79588 11657886 ~ 11672957 (+) False LOC122354243
TU119535 lncRNA upstream 181114 11571102 ~ 11571431 (+) True G80825
TU120452 lncRNA downstream 17289 12887410 ~ 12889883 (+) True G81421
TU120453 lncRNA downstream 19845 12889966 ~ 12896107 (+) True G81422
TU120457 lncRNA downstream 95650 12965771 ~ 12972403 (+) False G81424
TU120458 lncRNA downstream 95650 12965771 ~ 12976155 (+) True G81424
XR_006252067.1 lncRNA downstream 107468 12977589 ~ 13019135 (+) True LOC122353896
XM_043252113.1 mRNA upstream 37194 11706108 ~ 11715351 (+) True tbce
XM_043252115.1 mRNA upstream 37194 11706108 ~ 11715351 (+) False tbce
XM_043252114.1 mRNA upstream 37194 11706108 ~ 11715351 (+) False tbce
XM_043252117.1 mRNA upstream 52331 11698324 ~ 11700214 (+) True tomm20b
XM_043251529.1 mRNA upstream 152847 11597790 ~ 11599698 (+) True map1lc3c
XM_043251732.1 mRNA downstream 57209 12927330 ~ 12955366 (+) True LOC122353848
XM_043251782.1 mRNA downstream 164516 13034637 ~ 13055876 (+) True LOC122353891
XM_043251548.1 mRNA downstream 290021 13160142 ~ 13161913 (+) True LOC122353677
XM_043252484.1 mRNA downstream 294640 13164761 ~ 13210431 (+) True arid3a
XM_043252485.1 mRNA downstream 295002 13165123 ~ 13210431 (+) False arid3a
TU119601 other upstream 52331 11698364 ~ 11700214 (+) False tomm20b
TU119538 other upstream 79607 11580026 ~ 11672938 (+) False LOC122354243
TU119539 other upstream 91603 11580026 ~ 11660942 (+) True LOC122354243
TU119513 other upstream 222909 11528734 ~ 11529636 (+) False eif4a3
TU119512 other upstream 225503 11525059 ~ 11527042 (+) True rpl37a
TU120439 other downstream 5392 12875513 ~ 12879098 (+) False G81416
TU120440 other downstream 5392 12875513 ~ 12879098 (+) True G81416
TU120442 other downstream 5392 12875513 ~ 12879313 (+) False G81416
XR_006252101.1 other downstream 294640 13164761 ~ 13210690 (+) False arid3a
TU120480 other downstream 358822 13228943 ~ 13231092 (+) True G81434

Expression Profile