RNA id: TU120628


Basic Information

Item Value
RNA id TU120628
length 1640
lncRNA type read_through
GC content 0.43
exon number 2
gene id G81512
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 12817753 ~ 13057881 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTCCTTCCAATCTTTGCTATCGTTAACGAGTTCCACAActtaaaagcaatattttaattttgtttttgcaagAACTGCATGTTTCCGAGCCGAAACGAAGGTAGAAACGCATctacaaaactaaactaaacttgaCTTTCATCTCAATTTAAAGAACAGAAACGCCAACGCATCATATCCTAAAAACCGCTTCAGCAGCAAATTAGACGTGACCGAGATCATTTATATCCGATGTTTATTTCGTGACTAtaacatatttacacacaaacattcatacatacatatttacagaCGGCCTGTGAGCATTCTTCCGACGTGTAGGACGATGTCCCAAGCGGAtttaggaaattaaaaaaactcatgcttaaagaccaaaaaaacaacccaaaaacGTTTTCGATGCAAGAGATCCGTTTAAAGCTATCCTTTTTCTGTGCTACaagctttgcttctttttttttttttttttttttgcattcgcGGTCGAATCCACGTCGAAGCGTTCGGTGGATTTCTGTTGCGGCTGAAACGAAACGAAAAGATGCAAAAACGAAGTCCTCGACGCGTTGAaacggctttttttttttgctccacgACGGTTTATTTACAGCACGGCAGACAAACGTGAACCACACACCAAACACATCATTGGTTAATTCGTCTTCCCTCGAACCGATTGGCCCTCGCCCGAGAACAAACCTTCCCCATTCATTTGAAACTCTTCGCATCCTCCGTAAAAAGTAACCTATGTAACACGTAAGGCAGCAAAATCCCCGAGCCTTTATCAGGAGGTACTGTAGGAGACGAACTCAAAGTGCTCCGCATCTCAGTCCGAACAGCAGGACAGTGTCTTGGTAAAAAGCTACAATCCTTTTTGGCGCGAGCGCAATCCTGACACATCGAATTTCAAAATCAGCTGGATGCTTGTAGTGTCTCCGACGTGAACGTTTTGCTTATAATACATGACACAAGAGAAACAGCCACAGAGAACGAGACATCACTGTGCTAGAAGCATGTCGGCTCGAACGCACAATAACAGCACAGACGTGAAAATTGAGACGACGACTTTTTTAAGCGTTCGAATTGATGAGACGCTGCGTGAGTGGCACTTGAATGTGAACTAGTCCTAGTAGTATTTAAAGTAGGCACTTCGCCCCTCTGTGCCCTAGAGTTCAGATCCTCATTTGGCTGTACCACATCTGAGATGGCAAACCACAATCAGAAAAAAACGAAAGCTTGCTAAGAGAAAACGCGGCACCCGTTCAAGAAAACGAAAGCGAAGACCTAGTTTAGGCCattttaatcatcaaaattCCCATCCGAGTGAGCAAAAGAAATGCCGATAGATTATTTATTCTATAATATGCGTTACAACTTtattccctctttctttctatactatatacatttgcattttacacaGACGTGGGGCCATATTGTCGAAAACGAGAGGTAACGCGTTCGGGGTTTAGGCCGAACGTTGGGATTGGACAGAGGGTCGTGCTGGGAACAGGAAGTGGTAGAGATgagtgttctgattggttctcaAGAGGAGCTCTTGGACAAGTTGGGGTAAAGCACCACTGCTGTCACGGCAACCACGGCGGCGACCACCGGCATCCAGGGCATCCATCCGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252068.1 lncRNA downstream 102148 12710406 ~ 12715974 (-) True LOC122353897
TU120378 lncRNA downstream 152158 12663831 ~ 12665964 (-) False hesx1
TU120330 lncRNA downstream 243009 12574863 ~ 12575113 (-) True G81353
TU120327 lncRNA downstream 249813 12568109 ~ 12568309 (-) True G81350
TU120326 lncRNA downstream 282696 12534950 ~ 12535426 (-) True G81349
TU120731 lncRNA upstream 102723 13160173 ~ 13161310 (-) True G81578
TU120765 lncRNA upstream 161514 13218964 ~ 13220664 (-) True G81605
TU120772 lncRNA upstream 165075 13222525 ~ 13224861 (-) True G81608
TU120780 lncRNA upstream 176351 13233801 ~ 13246273 (-) True G81611
TU120781 lncRNA upstream 176351 13233801 ~ 13235058 (-) False G81611
XM_043251781.1 mRNA downstream 51456 12747106 ~ 12766666 (-) True dennd6aa
XM_043251759.1 mRNA downstream 73977 12738000 ~ 12744145 (-) True LOC122353868
XM_043251760.1 mRNA downstream 73986 12738000 ~ 12744136 (-) False LOC122353868
XM_043251767.1 mRNA downstream 86005 12729331 ~ 12732117 (-) True LOC122353875
XM_043251769.1 mRNA downstream 90074 12725774 ~ 12728048 (-) True LOC122353878
XM_043251277.1 mRNA upstream 170195 13227645 ~ 13231143 (-) True gamt
XM_043252703.1 mRNA upstream 199187 13256637 ~ 13261242 (-) True abhd8b
XM_043252704.1 mRNA upstream 203934 13261384 ~ 13264933 (-) True dda1
XM_043252716.1 mRNA upstream 209384 13266834 ~ 13287916 (-) True ano8b
XM_043252928.1 mRNA upstream 244895 13302345 ~ 13307142 (-) True plvapb
TU120285 other downstream 370835 12445860 ~ 12447287 (-) True G81318
TU120112 other downstream 744047 12073596 ~ 12074075 (-) True G81192
XR_006252156.1 other downstream 917024 11900968 ~ 11901098 (-) True LOC122354705
XR_006252062.1 other downstream 1037313 11766831 ~ 11780809 (-) False ero1b
TU119760 other downstream 1398792 11403644 ~ 11419330 (-) True G80956
TU120815 other upstream 292486 13349936 ~ 13393922 (-) False ccl25b
TU120814 other upstream 335108 13392558 ~ 13393922 (-) False ccl25b
TU120868 other upstream 515281 13572731 ~ 13593554 (-) True G81663
TU120872 other upstream 548822 13606272 ~ 13609604 (-) True G81666
TU120873 other upstream 549047 13606497 ~ 13609604 (-) False G81666

Expression Profile