RNA id: TU120650


Basic Information

Item Value
RNA id TU120650
length 492
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G81522
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 12888928 ~ 12890216 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTTGACGGTTGCTCCGGATTACCTGGGCTACTCCATCTTCACCTTGCTGTGCTGCTGTTTACCTCTGGGCATCGCCGCGGTCATCTACTCGTGCAACACTCGAGATGCTAACGTTTCTGGACAGCGAGAGTTAGCGGTGAGAAGCTCCAGAGCGGCGCTGATCCTGAACAACGTGGCTCTCTGTTTAGGCATTCTTCTCATCACTGCAAGCACTGTTGCAATACTTTATGCATACGGCGTATTTTATTGAAACAATGGTGTATTCTACTCCAAACGCACCTGTACTCATACTGTAACTCAGACTTTGTGGGAGAAATGACAAGCATTTTCAATACCTTCGAAGGGACAATCAGTTTATTTCACGTTGTATTTAACGATGTCAGATTGTGTATTATCCGTGCATTCTGGGCAGAAATGAAACTGAATTTCagttaatgcttttttattattcttttaaattatgcattcaaataaaatgtgacgattaaaa

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120630 lncRNA downstream 18682 12867678 ~ 12870246 (-) True G81514
TU120636 lncRNA downstream 18682 12867678 ~ 12870246 (-) False G81514
XR_006252068.1 lncRNA downstream 172954 12710406 ~ 12715974 (-) True LOC122353897
TU120378 lncRNA downstream 222964 12663831 ~ 12665964 (-) False hesx1
TU120330 lncRNA downstream 313815 12574863 ~ 12575113 (-) True G81353
TU120653 lncRNA upstream 3723 12893939 ~ 12895846 (-) True G81524
TU120668 lncRNA upstream 75580 12965796 ~ 12998617 (-) True G81528
TU120680 lncRNA upstream 94188 12984404 ~ 12986006 (-) False vipb
TU120682 lncRNA upstream 157355 13047571 ~ 13048150 (-) True G81540
TU120731 lncRNA upstream 269957 13160173 ~ 13161310 (-) True G81578
XM_043251781.1 mRNA downstream 122262 12747106 ~ 12766666 (-) True dennd6aa
XM_043251759.1 mRNA downstream 144783 12738000 ~ 12744145 (-) True LOC122353868
XM_043251760.1 mRNA downstream 144792 12738000 ~ 12744136 (-) False LOC122353868
XM_043251767.1 mRNA downstream 156811 12729331 ~ 12732117 (-) True LOC122353875
XM_043251769.1 mRNA downstream 160880 12725774 ~ 12728048 (-) True LOC122353878
XM_043251749.1 mRNA upstream 66645 12956861 ~ 12965631 (-) False LOC122353859
XM_043251748.1 mRNA upstream 69830 12960046 ~ 12965633 (-) True LOC122353859
XM_043251744.1 mRNA upstream 77360 12967576 ~ 12981840 (-) True slc29a1b
XM_043251745.1 mRNA upstream 77360 12967576 ~ 12976742 (-) False slc29a1b
XM_043251746.1 mRNA upstream 77360 12967576 ~ 12976674 (-) False slc29a1b
TU120285 other downstream 441641 12445860 ~ 12447287 (-) True G81318
TU120112 other downstream 814853 12073596 ~ 12074075 (-) True G81192
XR_006252156.1 other downstream 987830 11900968 ~ 11901098 (-) True LOC122354705
XR_006252062.1 other downstream 1108119 11766831 ~ 11780809 (-) False ero1b
TU119760 other downstream 1469598 11403644 ~ 11419330 (-) True G80956
TU120651 other upstream 65 12890281 ~ 12896130 (-) False G81523
TU120652 other upstream 2377 12892593 ~ 12896130 (-) True G81523
XR_006252063.1 other upstream 66645 12956861 ~ 12965633 (-) False LOC122353859
TU120815 other upstream 459720 13349936 ~ 13393922 (-) False ccl25b
TU120814 other upstream 502342 13392558 ~ 13393922 (-) False ccl25b

Expression Profile