RNA id: TU120802


Basic Information

Item Value
RNA id TU120802
length 604
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G81624
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 13329404 ~ 13330007 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCTTTGATCGTGAAGAGAGACGTGACAAAAGGAGGTCAGAGTTATTCAAGTATCGCCGAGCTGCTGAAATAGTTTGCTCGCATTTCAATTCGATTTCGTGATTTCGTGTCGGTTTTAGCTCCGGTTTTGGGGTTTTAATTTAAGCACGTTGACATGGAAGAATGacatctttaaaagaaaatatatacgtaaaaaaaaaaagtaaataattgtaaaatgttacgaTTTTACTGGCGACTGCTTCTCTGATCTGTAGATCTACAAAACAGATCAGGAACTAGTTCATTTGgacatatgaaaaataatagatATTTATATTCTCAATTGAGCGTTCGAAATAGTTCGAACTATGGCGATGGGTGTATCGTTTCTGACGTGTGTTGCACGCTGTAGACCAATCGCAACAGAACGAGCCATCGAACCAATCAGAGCGCAGTAGGCTCACGGAAAGGCGGGGTTTAGAGAGGCTAAAACTTTGAACTGCTTCGAACGAACCGTTTGAGAATAGCTGGAGAATCCAaagatattaaaacaaaagcGTTTTGGACTTTGCATGCATGTGAAGCTAATACAGGGCGTTCCTGAAACAATATaaggaaaaa

Function

GO:

id name namespace
GO:0000439 transcription factor TFIIH core complex cellular_component

KEGG:

id description
ko03420 Nucleotide excision repair

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120797 lncRNA downstream 4273 13323679 ~ 13325131 (-) True G81621
TU120794 lncRNA downstream 7383 13320166 ~ 13322021 (-) True G81619
TU120773 lncRNA downstream 15925 13253410 ~ 13313479 (-) True G81609
TU120780 lncRNA downstream 83131 13233801 ~ 13246273 (-) True G81611
TU120832 lncRNA upstream 36560 13366567 ~ 13368885 (-) False ccl44
TU120837 lncRNA upstream 59724 13389731 ~ 13390119 (-) True G81643
TU120853 lncRNA upstream 130467 13460474 ~ 13701441 (-) True G81657
XR_006252070.1 lncRNA upstream 178650 13508657 ~ 13511170 (-) True LOC122353923
TU120875 lncRNA upstream 274495 13604502 ~ 13704964 (-) True G81667
XM_043252861.1 mRNA downstream 13766 13310322 ~ 13315638 (-) True babam1
XM_043252928.1 mRNA downstream 22262 13302345 ~ 13307142 (-) True plvapb
XM_043252716.1 mRNA downstream 41488 13266834 ~ 13287916 (-) True ano8b
XM_043252704.1 mRNA downstream 64471 13261384 ~ 13264933 (-) True dda1
XM_043252703.1 mRNA downstream 68162 13256637 ~ 13261242 (-) True abhd8b
XM_043252567.1 mRNA upstream 36562 13366569 ~ 13369997 (-) False ccl44
XM_043252568.1 mRNA upstream 36562 13366569 ~ 13369063 (-) False ccl44
XM_043252566.1 mRNA upstream 36957 13366964 ~ 13369997 (-) True ccl44
XM_043251368.1 mRNA upstream 62586 13392593 ~ 13394008 (-) True ccl25b
XM_043251595.1 mRNA upstream 96247 13426254 ~ 13442667 (-) True nrtn
TU120624 other downstream 271523 12818122 ~ 13057881 (-) False G81512
XR_006252063.1 other downstream 363771 12956861 ~ 12965633 (-) False LOC122353859
TU120651 other downstream 433274 12890281 ~ 12896130 (-) False G81523
TU120652 other downstream 433274 12892593 ~ 12896130 (-) True G81523
TU120285 other downstream 882117 12445860 ~ 12447287 (-) True G81318
TU120815 other upstream 19929 13349936 ~ 13393922 (-) False ccl25b
TU120814 other upstream 62551 13392558 ~ 13393922 (-) False ccl25b
TU120868 other upstream 242724 13572731 ~ 13593554 (-) True G81663
TU120872 other upstream 276265 13606272 ~ 13609604 (-) True G81666
TU120873 other upstream 276490 13606497 ~ 13609604 (-) False G81666

Expression Profile