RNA id: TU121198


Basic Information

Item Value
RNA id TU121198
length 820
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G81883
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 14528630 ~ 14529449 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agagagagagagacagagagagagagagacagagagagagagagagagagagagacagagagagagagacagagagagagagagacagagagagagagagagacagagagaaactgaAAATGAGAGCAGTAATGAATATTATAGCGATGTGCTGATCCTCCAACATCCGCCTGCCTGAAAACGGCCAATTCAATTAGAGCCAGCAAGACCAGGGCCCATATTGAAGATTATAAGAATCCTCTCCTATTTTAGCTTAAAAAAGACCAAACCAAGAGCATGTTTCATCTTGCTTAATGTGTTAATGTAGTGATTATATCTATTTTTCTGACCATAAAACCTCTTTTAAGAGTTAAGATGCTTTCTGAATTGCTTATTTCTTTACTGGGATCTTTTGTTTAATCGCAAGAGGAAACACCCACATTTCTTAGAATGTTCTTAAACTTTTGTGTCTAGGAGCAGCTCTCAGCACCAAGACTTTTCACGAATACAGGCCCAGATGAGGCAGATGATGCGAACACTTTGGCTGTAAGgaaattaaactgtaaaactttaTTACTCTGCATGTTTGCATGACAAGGCGTAACggttatgtaaatgttttaagcagATGCTTCGTCCGCATAAGGAATGTAATCATGAACGTCACGCTTATTTGTTATATTGATATCAAATACGCCATGTATATTGTGCTCGGCTATTAAACATTCGGAAATATCTAGCAAATTTCACATGGTTAACCTTATAAACTATTTAACTGATGATAGATACAGATGCATGGATGACAGaataaaatgatagatagatagacagacagatagac

Function

GO:

id name namespace
GO:0007034 vacuolar transport biological_process
GO:0030120 vesicle coat cellular_component
GO:0030126 COPI vesicle coat cellular_component
GO:0030137 COPI-coated vesicle cellular_component
GO:0030660 Golgi-associated vesicle membrane cellular_component
GO:0030662 coated vesicle membrane cellular_component
GO:0030663 COPI-coated vesicle membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121197 lncRNA downstream 1103 14526113 ~ 14527527 (-) True G81882
TU121177 lncRNA downstream 43729 14484503 ~ 14484901 (-) True G81872
TU121182 lncRNA downstream 44699 14483496 ~ 14483931 (-) True G81877
TU121181 lncRNA downstream 45199 14483019 ~ 14483431 (-) True G81876
TU121180 lncRNA downstream 46051 14482160 ~ 14482579 (-) True G81875
TU121199 lncRNA upstream 1176 14530625 ~ 14531429 (-) True G81884
TU121206 lncRNA upstream 12311 14541760 ~ 14544078 (-) True G81890
TU121207 lncRNA upstream 12311 14541760 ~ 14544078 (-) False G81890
TU121205 lncRNA upstream 15658 14545107 ~ 14545703 (-) True G81889
XR_006252041.1 lncRNA upstream 107675 14637124 ~ 14643541 (-) True LOC122353646
XM_043251912.1 mRNA downstream 17008 14488377 ~ 14511622 (-) False elovl1b
XM_043251910.1 mRNA downstream 17090 14488377 ~ 14511540 (-) False elovl1b
XM_043251915.1 mRNA downstream 17411 14488377 ~ 14511219 (-) False elovl1b
XM_043251911.1 mRNA downstream 34808 14488377 ~ 14493822 (-) False elovl1b
XM_043251914.1 mRNA downstream 34834 14488377 ~ 14493796 (-) True elovl1b
XM_043252324.1 mRNA upstream 30452 14559901 ~ 14589170 (-) False mast3b
XM_043252323.1 mRNA upstream 30452 14559901 ~ 14589170 (-) False mast3b
XM_043252320.1 mRNA upstream 30452 14559901 ~ 14589170 (-) False mast3b
XM_043252319.1 mRNA upstream 30452 14559901 ~ 14589170 (-) True mast3b
XM_043252322.1 mRNA upstream 30452 14559901 ~ 14583566 (-) False mast3b
XR_006252040.1 other downstream 76890 14442601 ~ 14451740 (-) True chrna4b
TU121063 other downstream 601150 13856300 ~ 13927480 (-) False G81799
TU121103 other downstream 641365 13885683 ~ 13887265 (-) True G81829
TU120846 other downstream 828672 13698099 ~ 13699958 (-) True G81650
TU120873 other downstream 919026 13606497 ~ 13609604 (-) False G81666
TU121170 other upstream 5269 14534718 ~ 14536392 (-) True G81866
TU121492 other upstream 675512 15204961 ~ 15214058 (-) True G82067
TU121487 other upstream 705039 15234488 ~ 15235056 (-) False LOC122354561
TU121711 other upstream 871469 15400918 ~ 15401691 (-) True LOC122354564
TU122317 other upstream 3008054 17537503 ~ 17540171 (-) False G82585

Expression Profile