RNA id: TU121373


Basic Information

Item Value
RNA id TU121373
length 2607
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G81990
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 14860142 ~ 14863210 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTTCCAGCTTTAGTTTGACCCGTCTTTCTTCAAAGTCCTTTAGTAGTGTCTCAGTCAGACCTTTCTGGGAAGAAGGCGACGACAGGTCAGCAAGTGCACTCAAGGGTTTGATGGGGGTTGTTCTTGAAACAGTCGGGGACGCGGCTTTCGGGCTGCCCCATGGCTGCGGTGTCATAATTGACACTGAGGGAAGTCTAAAAGTGGGTCGTGGTGAGGACAACTGTGAACTTTACCTGTTACAGATAAGTGAGAAGTGTCCAGACTTCCGAAATAAGGATTACTGtaattagttttcttttctaGAAATGCAGAATCCACTTCTGCCATGTTAGCATGAAGAGTTTGTGGTGAAAATGCAGTCTCTTCGCTGGTTAATGGAGACCTAGGTTCAGAGGAATTCACAGATGCTGGGTTAGGTGCTGAGAAAGACTGACTACTGGACTCTCTCAGCTCTTGGAGCTCTTGTTCTCGTCTGAGGTCTTCTTCAATTTCCTGACGAATGCTGTTTGGGGCATTCTGCATTTTAGGGCTCCAGTCGGTGTACTCAAGGTGAGATTTCCAGGTAGGAGTGTACCGACTGGTTTTTGGGGGTTCCAGTGGGGACGGAGGATTTTGAGAGTAAATTCTGGTCCTTCCTGACATGCTTGTGCCATTTTCCACAATCCAGGATGGCTCTTTATTTGTTCTAAGGGTACTGGTTTGGCACTCTACCCCATTTTCTTTACGAACGATTACTTTAGGATGGTCCTCAGGATGTGCACTTACTTGGACTTGGTTTCCAAAAGTGCTGCTATCAGAGTTTTTCTGAAGAATAGATTCATCAGGATGTCGGTGAGGACAGCAAGGCGAAAGAACTTCCTGTGAGTCCAAAAGGTTACCTTCCTCTACAAGTGCAAGTTTCTCTGTAATCCATGTGCCATCTGCAGACACTGTGCTTTGCTCTAAATCATTTGTGGGACTTTCTCTTAGACTTGACCCCAACGATGTGACTGGAATTTCATCCGTTTGTGACTCAAATGACTTCTCACTGTCCTGTACTTGGTTCTCTTGGGTATCATGGCTTGAAACACTGTTTGTGATCTGCCGCTGTTTCTCAAGTTCACGCTCTCTCTGAATAAGGAAACTTACTCTGTTGGGTTctttaggttttgaagcttTCACCTGTGGAGATGATAGGGACAGAATTGGCTTTATCCTGATCTCCACCATTTCTGAATTGTCTTTGTGCAAGATACCCCTTGATCGACGTAGACTCTCTTCCCGCTGTTGGGAAATTCTGATTTCCCTTTGAATTGGAGTTTCCTTTGCACTCAACATTGTCAAGCTGCTTCCCATCTCTGAAATGGAAGGATCGTTCGAAATGGTCCCATTGTTGGGGTATCCTCCGCTTTGGTCACCAAGACCAGAGTCAACATCATCTAAAGCACCTCCATTTTTTGAATCCTCAGTCACAGTTTCAGTCTGTACTTCTGTTTCTTGTTGGGTTGCTTGTGGGATCTCATTCTCATCTAGGCTGTTGTCTTTGAATTCTTGTCTTAGAGTGAAGATGCTGGCCGTCGAGGACAGAGTTCTTCCCCGCAGTTTGGGGGAATAAGGCAGCCGCTCGGGACTCTGTAGGAAGGGGTTCTGTTTTGATTGTTCCatcattaaaaactgttttcgTGCTGCGTTGAAGTCAATTTGCTCATTGTCTATGGTGCCAGGTTCAACCCTGGCTTCTTCAGTCTTCTCTCTCACTGGTTTGTAGCTTAGACTAAACCCATGCAGGAGTCTTTGCGGCGTGTTACTGAGGTCAAGATTTTCTAAGGCACTCCACTGTTCTTTAAGGGCAGGGCTCTTCTTGGGTGCCTGATTCCGGATGATCTCAGTTCGGTCTGGGTTTTCCTCATGTTCGTTCAAAGTGTAAGCATCTTCTATTCGGTAACGGTCATCTCCATTGGTTTCTTCGAAAAGCCTTCCAGGTATCTTTTCCTCTGTGTACGTTTGTAGCTTAAATATGCTCTTCTCCTTCAGGGTATTCAGTTTGGCCTGCCTTTGTGGAGAAACCATGTAGACCTCATTCATCTCAGCTTCTGGACTTGCTGGGTCATCTACAAAGGAATAGAAGCCAACATGTGAGCCTGAGCTGCTGGCGGTTGCAGGGCTGCTTGGGTAGCTTGGAGTACTGGGCCTAAAGTCTTCACTCTCACTTCCATCCTCAGACACAGCCACTTGCTTAGCCTGGACCACCACATCTGGAGGACTGTTGCCATACCCAGAGGACACTATCACAGTGGGCTGCATGTCTGTCACTGTTATGCTTTCCAAGCTGAACCTGAAAGAGTTACCATCCTGACTGCTACTCCACGTGTTCTCTAGCGATTGGGGTTGGCCTGTAGGGCTCAATATGGAGCGCAAATCCGACTGCTCTAGCTTAGGGGAGAAGGGCTTCATCACCCAACGTTTTGGGTTGCTGGTCATGGGCACTTTGGATGGTGGATGGTTCTGGGCAGCCCTGGGAAGTGGAGGTCTCAGAGAATAATGGGAATGGATCACAGCCTGCTCCTCTGTTAAGGAGTGAGTGCATGCATCATATGGGTTGACCGTCACAGTAGATGCCTGTCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252092.1 lncRNA downstream 50173 14807103 ~ 14809969 (-) True LOC122354194
TU121296 lncRNA downstream 61116 14798726 ~ 14799026 (-) True G81954
TU121253 lncRNA downstream 198862 14659709 ~ 14661280 (-) True G81920
XR_006252041.1 lncRNA downstream 216601 14637124 ~ 14643541 (-) True LOC122353646
TU121205 lncRNA downstream 314439 14545107 ~ 14545703 (-) True G81889
TU121380 lncRNA upstream 26318 14889528 ~ 14891468 (-) True G81996
XR_006252121.1 lncRNA upstream 31154 14894364 ~ 14907495 (-) True LOC122354533
TU121395 lncRNA upstream 195994 15059204 ~ 15059536 (-) True G82009
TU121458 lncRNA upstream 242704 15105914 ~ 15106884 (-) True G82044
TU121449 lncRNA upstream 247791 15111001 ~ 15112738 (-) True G82037
XM_043252384.1 mRNA downstream 62047 14789168 ~ 14798095 (-) False tmem259
XM_043252383.1 mRNA downstream 62047 14789168 ~ 14798095 (-) True tmem259
XM_043252864.1 mRNA downstream 205622 14653436 ~ 14654520 (-) True sid1
XM_043252602.1 mRNA downstream 207020 14651265 ~ 14653122 (-) True si:ch211-1a19.2
XM_043252321.1 mRNA downstream 276576 14559901 ~ 14583566 (-) False mast3b
XM_043251580.1 mRNA upstream 252562 15115772 ~ 15126504 (-) True slc1a8a
XM_043251591.1 mRNA upstream 263432 15126642 ~ 15131592 (-) True LOC122353710
XM_043251590.1 mRNA upstream 269115 15132325 ~ 15138312 (-) True sgta
XM_043252648.1 mRNA upstream 309531 15172741 ~ 15175386 (-) True LOC122354454
XM_043251646.1 mRNA upstream 334592 15197802 ~ 15200640 (-) True LOC122353766
TU121170 other downstream 323750 14534718 ~ 14536392 (-) True G81866
XR_006252040.1 other downstream 408402 14442601 ~ 14451740 (-) True chrna4b
TU121063 other downstream 932662 13856300 ~ 13927480 (-) False G81799
TU121103 other downstream 972877 13885683 ~ 13887265 (-) True G81829
TU120846 other downstream 1160184 13698099 ~ 13699958 (-) True G81650
TU121492 other upstream 341751 15204961 ~ 15214058 (-) True G82067
TU121487 other upstream 371278 15234488 ~ 15235056 (-) False LOC122354561
TU121711 other upstream 537708 15400918 ~ 15401691 (-) True LOC122354564
TU122317 other upstream 2674293 17537503 ~ 17540171 (-) False G82585
TU122319 other upstream 2675173 17538383 ~ 17540171 (-) True G82585

Expression Profile