RNA id: TU121666


Basic Information

Item Value
RNA id TU121666
length 2114
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G82173
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 15289648 ~ 15291976 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAAAACCTAAATATTTTAGGTAATATAGAATCCTGGGGAAAATGGCACATATGGTCAccatagtatgtgtgtgtgtgtgtgtgtgtgtgtgtttacctctGTAGTGCTCCATACGTGTGTGATGTGTGACTCCCTGTGAGCGAAAGCTGAGGCTGAGGATGTATCGTGGGTCTGAACTGTCCCGCACCAAAAACGAGCCATCTGGCTTTCCCCTCAGCTTCATTTCGGCATCCTCCCAGTTCATCGGCCCCCATCAGTGGACACATGATTGGGGGCGGGGCCACTCTAGCAGGAGCCGGAGTCTCCATTGGTGATGGGGCCGAATGTGGAAGTGCCCGGAAGAAAGCATCTGAGGCAAAGGAgaagcatttttaaacacaactgCAAATATTGAGTTGCATTCTAAAACTAGCTAAAcgaaaaatgtaatcaaaaatacaataaatttaGTAATACCGTGAAATATAATATgtagtgtattttaaaaaagtaaatcattACTGTGACGGCAAAGCTGAATATCCGGCATCAGTAATAAGTTGAATAAATTGTTCTAATTTGCGGATTttctgctcgagaaacatttattattatataagtgCTTCTTAATGAATATTTTCGGTCCGGATTCTTTGAGAAATggttgaaaaaacatttatttgaaatagaaatcttttgcaacgTTATGAATGTATACCAGTATAACAGTACAAAACAATTAACAGttagattaaaaattatttataaacagGAAAGTGTATAATTTTGGTCCTGCAATTGACTAGAAGCGTCTGTAATGTCTAATATCAAGCTGTACATAAACTACGTATAACAATTAGACaagaacataatatatattatttagatgAATTAGACCAGGGCTAGTTGTCACGTTTTTTTACAATGGTGAATATTTACCATTGCAGgtttatttctgaatgttcatttcatttgtgtattgtgcaaaaaaacaactgaacatTTTCATTGCCCAGGAACATGTcccagttttatattttttgcacttGTCTGCCCAACAGCTGATTGGTGATTCTAATTTCATAGGATTCTGAACTGGGTGTATAATATAAAACCATTGTTAATTTACCAAAACCCTTCTATTTAAATCAACTCCCCcctgtgacaacttgccccggCCTCCAATATAGCACATCACACTGATAGCACACTGATGAAATGTCATATCAACTACCAATAACCATGTGTACATGCTCTTTAACCTCCTTTATATCTTATACATAAGTTCTATTATAAGAAGCTTAAGTTTGAACTCTAGAGTATGACACCATCGCTCACACTTCCTCTCTTCACAAACGCACATTAAACCACCTTTTTCCTCCGAACGGCAGGAACTGAAAAACGAAACCACACGATCAACCAAAGCCTTTGTCAAGCAAAACGATACATGTGGTGGGTGGCATGTATTGTCTTTGCCTTTCACAAGAATACCACAGTTGCATTCGCACTTTATTACGCTTCTCTTTGCATTTAATGAATGGAATAAAGGTGCTTCTGAGGGCAGAAACTGAGCCGGCCTCCGAAAAAACAGGGGAAAGGGAGGTTGGAGTCTGCTCTCAGAACCAGAAAGAcaccctgaaacacacacacaccggcccCTCCACTGCACCCAAGTCTTACCATTGAGGCTGAGACTATGCTGGATGGTGGCGTGGagagggggaggaggaggaagaggcagAGGGAGAGACTGCAGGGAGGCCCCCATAACACTCACTAGGAAAGGCCCAGGCTGCGGCCCACCTATATCGTCTGGAAGAGAGCAGGAGGGAGGGTTCAGAGCCAGGAGAGTAAGGAGATGTCACAGAAAAAGAAGCAATAGAAGGGGAGACAGAAGCGAAGAGAAGGTTCAGGTCTATTAGAATGAGACAGGTGCCACAGGCGATGAAGAGGAATCAGAACATGACCGAATTCAACCCTAACACCACTCGTCTTCAGAGCAAAGGGGCCGCAACTTCCTTCACTCTTGCATACATTACCAGAAATAGATCAAAACGCTGCTAGATTACATCGCAGCATTGGAACTAACGCGAAGATTGCATTCATTGACCTGCGCTTTATGCGTGAGCAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252124.1 lncRNA downstream 80814 15208320 ~ 15208834 (-) True LOC122354566
TU121470 lncRNA downstream 124043 15165405 ~ 15165605 (-) True G82053
TU121449 lncRNA downstream 176910 15111001 ~ 15112738 (-) True G82037
TU121458 lncRNA downstream 182764 15105914 ~ 15106884 (-) True G82044
TU121395 lncRNA downstream 230112 15059204 ~ 15059536 (-) True G82009
TU121669 lncRNA upstream 5940 15297916 ~ 15298875 (-) True G82176
TU121671 lncRNA upstream 8450 15300426 ~ 15301171 (-) True G82178
TU121670 lncRNA upstream 10091 15302067 ~ 15302341 (-) True G82177
TU121647 lncRNA upstream 11669 15303645 ~ 15305613 (-) True G82162
TU121674 lncRNA upstream 21969 15313945 ~ 15314480 (-) True G82181
XM_043252784.1 mRNA downstream 6804 15267975 ~ 15282844 (-) False gpr179
XM_043252782.1 mRNA downstream 6804 15267975 ~ 15282844 (-) False gpr179
XM_043252783.1 mRNA downstream 6804 15267975 ~ 15282844 (-) True gpr179
XM_043251649.1 mRNA downstream 43948 15242488 ~ 15245700 (-) True LOC122353770
XM_043252799.1 mRNA downstream 54212 15233933 ~ 15235436 (-) True LOC122354561
XM_043252792.1 mRNA upstream 57762 15349738 ~ 15371682 (-) True jupa
XM_043252801.1 mRNA upstream 108942 15400918 ~ 15401685 (-) False LOC122354564
XM_043252260.1 mRNA upstream 131176 15423152 ~ 15430070 (-) True krt98
XM_043252098.1 mRNA upstream 175994 15467970 ~ 15474238 (-) True hyls1
XM_043252100.1 mRNA upstream 197644 15489620 ~ 15493617 (-) False ptp4a1
TU121487 other downstream 54592 15234488 ~ 15235056 (-) False LOC122354561
TU121492 other downstream 75590 15204961 ~ 15214058 (-) True G82067
TU121170 other downstream 753256 14534718 ~ 14536392 (-) True G81866
XR_006252040.1 other downstream 837908 14442601 ~ 14451740 (-) True chrna4b
TU121063 other downstream 1362168 13856300 ~ 13927480 (-) False G81799
TU121711 other upstream 108942 15400918 ~ 15401691 (-) True LOC122354564
TU122317 other upstream 2245527 17537503 ~ 17540171 (-) False G82585
TU122319 other upstream 2246407 17538383 ~ 17540171 (-) True G82585
TU122326 other upstream 2258605 17550581 ~ 17559836 (-) True G82588
TU122328 other upstream 2281626 17573602 ~ 17576984 (-) True G82590

Expression Profile