RNA id: TU121779


Basic Information

Item Value
RNA id TU121779
length 635
lncRNA type sense_over
GC content 0.33
exon number 1
gene id pla2r1
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 15552356 ~ 15577065 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcgcTATCGGCAGACCcggagattggctgaatggattcaaaaaagggaaaacccagcttattaactctgggggagttggagaatgagcctatttccaaaaaagcggagtgttcctttaatgaaTGTTAGAACTATATGTCAAGACAATCAAGGcttcattgtttagttttaatCATTGACACAGATTTCATATATTTGCAATAAGTTTGATAAACagttatatttgaatatacaaTAAGTTCTTTCCATTCTTACATTTTGTATTACTGTAAATCTGtgggtttgtgtgttttgctgtATACGTGTGATTGTGTTTTAAAGGGTCTGCCTAGTCTTACTGTGTTATGTTTCTGTGTAACTTTTCAGGGGGTGTGGGGGTTCTTCTCTAATTTTCAAGAACacttgatcagtttaatgtgaccaaatgtattttcagtgtttcacctgatatatattttttttatattaaattctcCACTTGAACTGATCGTGACTTTTGAGCAGAGAACCGGAAATGTATGCAGTGAATCtataatcaaacacacaattataaaatacaaatgagaaacaaatattttgtaccttttgtttaaaaagttagTTATATTAGTCGCAGGCTATGACAAAtttaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121725 lncRNA downstream 54289 15497650 ~ 15498104 (-) True G82214
TU121729 lncRNA downstream 80704 15471306 ~ 15471689 (-) True G82216
TU121718 lncRNA downstream 101994 15444522 ~ 15450399 (-) True G82211
TU121644 lncRNA downstream 105556 15420805 ~ 15446837 (-) True G82160
TU121643 lncRNA downstream 105556 15440504 ~ 15446837 (-) False G82160
TU121823 lncRNA upstream 43028 15596055 ~ 15596408 (-) False LOC122354045
TU121822 lncRNA upstream 60119 15613146 ~ 15613851 (-) True G82260
TU121866 lncRNA upstream 164570 15717597 ~ 15732758 (-) False G82286
TU121874 lncRNA upstream 175762 15728789 ~ 15729815 (-) True G82294
TU121865 lncRNA upstream 178016 15731043 ~ 15732758 (-) True G82286
XM_043252022.1 mRNA downstream 1705 15523343 ~ 15550688 (-) False ly75
XM_043252021.1 mRNA downstream 1705 15523343 ~ 15550688 (-) False ly75
XM_043252020.1 mRNA downstream 1705 15523343 ~ 15550688 (-) True ly75
XM_043252257.1 mRNA downstream 30677 15499114 ~ 15521716 (-) True myom2a
XM_043252100.1 mRNA downstream 58776 15489620 ~ 15493617 (-) False ptp4a1
XM_043252024.1 mRNA upstream 24579 15577606 ~ 15590464 (-) True itgb6
XM_043252026.1 mRNA upstream 42538 15595565 ~ 15614937 (-) True LOC122354045
XM_043252025.1 mRNA upstream 43133 15596160 ~ 15614937 (-) False LOC122354045
XM_043252027.1 mRNA upstream 69895 15622922 ~ 15624013 (-) True zgc:193807
XM_043251650.1 mRNA upstream 77103 15630130 ~ 15631268 (-) True LOC122353771
TU121711 other downstream 150702 15400918 ~ 15401691 (-) True LOC122354564
TU121487 other downstream 317337 15234488 ~ 15235056 (-) False LOC122354561
TU121492 other downstream 338335 15204961 ~ 15214058 (-) True G82067
TU121170 other downstream 1016001 14534718 ~ 14536392 (-) True G81866
XR_006252040.1 other downstream 1100653 14442601 ~ 14451740 (-) True chrna4b
TU122317 other upstream 1984476 17537503 ~ 17540171 (-) False G82585
TU122319 other upstream 1985356 17538383 ~ 17540171 (-) True G82585
TU122326 other upstream 1997554 17550581 ~ 17559836 (-) True G82588
TU122328 other upstream 2020575 17573602 ~ 17576984 (-) True G82590
XR_006252134.1 other upstream 2081779 17634806 ~ 17635665 (-) False LOC122354622