RNA id: TU121822


Basic Information

Item Value
RNA id TU121822
length 459
lncRNA type intronic
GC content 0.44
exon number 3
gene id G82260
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 15613146 ~ 15613851 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAGCTGAACTGAAAGAAATCGATCGCTCAAATCTGGAACTGCAGAAGGACATAAAGGAGGAGAAGACTCGTATCCTGCACCTCTCCGAAGAGCTGAGGCAGAAGAAGACAGAGCTGGAAGACATCacagcagaaacagaaagattgAAACTGAAACTAGAGGAAGAGCTCACCACTGAACATGAAGACGAGGTCCTGAACGCTCAGATAAAGGCCGGGATTCGTTCGATGTATCAAATGATCGCACCTTACTGGAAAGAGTCTGAAGCTGTTGAGGACCCCTTCAAGCAGCTGCAGCTGATTCGAAAACAGTTTCAACTTATGAAAGCTtttggtgaagaacaaaaaGCAGGTGAAACTAAAGACAACAAGCAGCGGAGATCCAAGCTCTGAAGATGCACTAAAATCAGACAGATGTACCTAAACTACATAATAAAATCACAGCATTGTGTCCTGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121823 lncRNA downstream 16738 15596055 ~ 15596408 (-) False LOC122354045
TU121779 lncRNA downstream 60119 15552393 ~ 15553027 (-) False pla2r1
TU121778 lncRNA downstream 60119 15552514 ~ 15553027 (-) False pla2r1
TU121725 lncRNA downstream 115042 15497650 ~ 15498104 (-) True G82214
TU121729 lncRNA downstream 141457 15471306 ~ 15471689 (-) True G82216
TU121866 lncRNA upstream 103746 15717597 ~ 15732758 (-) False G82286
TU121874 lncRNA upstream 114938 15728789 ~ 15729815 (-) True G82294
TU121865 lncRNA upstream 117192 15731043 ~ 15732758 (-) True G82286
TU121876 lncRNA upstream 120706 15734557 ~ 15738741 (-) True G82296
TU121897 lncRNA upstream 175694 15789545 ~ 15792089 (-) True G82311
XM_043252024.1 mRNA downstream 22682 15577606 ~ 15590464 (-) True itgb6
XM_043252023.1 mRNA downstream 36081 15552356 ~ 15577065 (-) True pla2r1
XM_043252022.1 mRNA downstream 62458 15523343 ~ 15550688 (-) False ly75
XM_043252027.1 mRNA upstream 9071 15622922 ~ 15624013 (-) True zgc:193807
XM_043251650.1 mRNA upstream 16279 15630130 ~ 15631268 (-) True LOC122353771
XM_043251558.1 mRNA upstream 32710 15646561 ~ 15648345 (-) True LOC122353685
XM_043251292.1 mRNA upstream 162336 15776187 ~ 15781689 (-) True b3gnt5a
XM_043251651.1 mRNA upstream 228310 15842161 ~ 15949590 (-) True LOC122353772
TU121711 other downstream 211455 15400918 ~ 15401691 (-) True LOC122354564
TU121487 other downstream 378090 15234488 ~ 15235056 (-) False LOC122354561
TU121492 other downstream 399088 15204961 ~ 15214058 (-) True G82067
TU121170 other downstream 1076754 14534718 ~ 14536392 (-) True G81866
XR_006252040.1 other downstream 1161406 14442601 ~ 14451740 (-) True chrna4b
TU122317 other upstream 1923652 17537503 ~ 17540171 (-) False G82585
TU122319 other upstream 1924532 17538383 ~ 17540171 (-) True G82585
TU122326 other upstream 1936730 17550581 ~ 17559836 (-) True G82588
TU122328 other upstream 1959751 17573602 ~ 17576984 (-) True G82590
XR_006252134.1 other upstream 2020955 17634806 ~ 17635665 (-) False LOC122354622

Expression Profile