RNA id: TU121865


Basic Information

Item Value
RNA id TU121865
length 1634
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G82286
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 15717597 ~ 15732758 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAAAGATCACTGACCTTCAGGACGGAGGTCATAAACACTGAGCTGCCCATAAGGACAAATATCATGAGGCCAGTGAAGCGCTGCTCTCTGATGCCCAAGAACTTGGGCTGTTCTCCGGGTGCGGAGCATTCGGACTCCAGCTTCAGGCTGTTCACGTGGGTGATTGACAGCACCGTCGCAGCCACAAACCACGGCAGGCCCATCAGAGAGCACACACCCAGCATCACACCCACCACAAACAGGTCCAGATGATACCCACAGCCTTTCTGTGGAGGCACGCAGACACCACAAAAGATATCAAGTCTACAAGAATATCTGCTACAGAAGCAAACTGAGAAGGACTTGGCAACGCACCTTCAGTTTGTGTTCCTTCCTGTTAATAATAACGGCAGTGATTTGTTGGTCCATGAAAATGAGGATGGTGCACAGCAGAGCTGGGATGACGGTCACGATAGTGGTCCACCACGGGTTTGGTCCTAATGGACTGATGAACCAGCCACGGTCATCTCTGGTTGGCTGTGAGAGATCATCTGATTAATTATGTACTCGTATGCGGAGGATTGATTTAtgcagaaatgtacaaaatgaaaAGGCCAAAGTACTGTAAAACCTCTCTTAATGACTCACTTTAAACTCATTGGGAACTTGTAGTTTGGGGGACGGGATCCCCAGAGCGTAATCGATTAGAACCATAGACAAAATAGTGAGGAAAACAGCAAAATCACTGATAATGGCCCTCACctgtataaaaacacaatgaattaGTTTAAGTGCTATAAAATGGACAAACAGCTTTGAAGTGCCCGTTGACTACTGGCCAGGTATAATGgtgtaaaatgattttcattattattatactgtattgttttacattaataattattatgttcatataaaacgttaatttgattataataaaataataacattattttaaaaagagactTTGCTCAgacaaaactttaatttaaatcaaagtaaaatattaaattttatattatatataattaaagaaagcaatattgttatcaatattaatagtaatagtaataaactttaaatatatttatatacatctaagatatcaaattaatatgcaattacctttttatcttttataatatatacttttttaattttaaaatattactattattattgttgttattattattaaatatgccAAAGAGTACAattactataatataaaaaataagcatgtaatataataataattataattttaaaataaaaaaaagctaactttGACAGCCCAACAAGACTTTTTTACACAACTTTTTTCTGATTCCCTAGGCTCCTCTTAAAACCTTGGTTTGAGacactgcattaaaacacacatatactttCACAGTTGTCTGTACCatactgaaacacacacaaacttctTGCCTTGGTTGGAAAGTAACGGCTAGTTTTGAACTCTTTAAGAAAAGAGGACATGGCAACCGTAGAGAAGAAGAGAACGACACACCAGAAGAGAACGTCAGGGATGTATGGACCGTGATGACCACAGGCTctgcccacaaactcacccctgTTCTCCACACAGTCCTGAGAcgaaacacaacacacaataaTCACAATCTGCTTCTGATGAAGAACACAAACTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121874 lncRNA downstream 1228 15728789 ~ 15729815 (-) True G82294
TU121822 lncRNA downstream 117192 15613146 ~ 15613851 (-) True G82260
TU121823 lncRNA downstream 134635 15596055 ~ 15596408 (-) False LOC122354045
TU121779 lncRNA downstream 178016 15552393 ~ 15553027 (-) False pla2r1
TU121778 lncRNA downstream 178016 15552514 ~ 15553027 (-) False pla2r1
TU121876 lncRNA upstream 1799 15734557 ~ 15738741 (-) True G82296
TU121897 lncRNA upstream 56787 15789545 ~ 15792089 (-) True G82311
TU121895 lncRNA upstream 57932 15790690 ~ 15792089 (-) False G82311
TU121947 lncRNA upstream 398024 16130782 ~ 16131481 (-) True G82347
TU121972 lncRNA upstream 482358 16215116 ~ 16215611 (-) True G82370
XM_043251558.1 mRNA downstream 82698 15646561 ~ 15648345 (-) True LOC122353685
XM_043251650.1 mRNA downstream 99775 15630130 ~ 15631268 (-) True LOC122353771
XM_043252027.1 mRNA downstream 107030 15622922 ~ 15624013 (-) True zgc:193807
XM_043252026.1 mRNA downstream 116106 15595565 ~ 15614937 (-) True LOC122354045
XM_043251292.1 mRNA upstream 43429 15776187 ~ 15781689 (-) True b3gnt5a
XM_043251651.1 mRNA upstream 109403 15842161 ~ 15949590 (-) True LOC122353772
XM_043252242.1 mRNA upstream 698896 16431654 ~ 16472967 (-) False tbl1xr1a
XM_043252241.1 mRNA upstream 698896 16431654 ~ 16472967 (-) False tbl1xr1a
XM_043252240.1 mRNA upstream 698896 16431654 ~ 16472967 (-) True tbl1xr1a
TU121711 other downstream 329352 15400918 ~ 15401691 (-) True LOC122354564
TU121487 other downstream 495987 15234488 ~ 15235056 (-) False LOC122354561
TU121492 other downstream 516985 15204961 ~ 15214058 (-) True G82067
TU121170 other downstream 1194651 14534718 ~ 14536392 (-) True G81866
XR_006252040.1 other downstream 1279303 14442601 ~ 14451740 (-) True chrna4b
TU122317 other upstream 1804745 17537503 ~ 17540171 (-) False G82585
TU122319 other upstream 1805625 17538383 ~ 17540171 (-) True G82585
TU122326 other upstream 1817823 17550581 ~ 17559836 (-) True G82588
TU122328 other upstream 1840844 17573602 ~ 17576984 (-) True G82590
XR_006252134.1 other upstream 1902048 17634806 ~ 17635665 (-) False LOC122354622

Expression Profile