RNA id: TU122086


Basic Information

Item Value
RNA id TU122086
length 449
lncRNA type inter_gene
GC content 0.24
exon number 2
gene id G82447
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 16610565 ~ 16648554 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

taatatatatatatatatatatatatatatatatatatatatatatatatatatGCGTGTGACAAAATATGTGAAAACATTATGTGGATCTTGCCTGGTTGAATATTGTAAAtcgtatatattttgtaaaatatgtaaaatgctACAGTAATGTATAAATACAGTGTGGATGAATTATacacatgtaaaaatgttttgtctggAAAATGGTATGTTTGAGTAATATCTTGATTCTTgccaaattgtttttttttttttagttttcacacttttttgtgttattgtgctCATTGATACAGTAAGGTACACATAGGGTGATTTGTTTTTAAGGATGTATACAaataatttgtgaaatattcctACTCACATTGTTTATTTCAAGATACAAAATCAGTTGTAGTAGAACACTTAAAATGTTATGCAAtggaaataaacataaaagtgTTCCA

Function

GO:

id name namespace
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function
GO:0019199 transmembrane receptor protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122082 lncRNA downstream 857 16606799 ~ 16609708 (-) True G82445
TU122081 lncRNA downstream 5162 16604726 ~ 16605403 (-) False LOC122353776
TU122076 lncRNA downstream 17684 16590806 ~ 16592881 (-) True LOC122353775
TU122073 lncRNA downstream 21805 16588394 ~ 16588760 (-) True G82437
XR_006252117.1 lncRNA downstream 107131 16499216 ~ 16503434 (-) True LOC122354516
TU122099 lncRNA upstream 130366 16778920 ~ 16906167 (-) False LOC122354244
TU122098 lncRNA upstream 252448 16901002 ~ 16906167 (-) True LOC122354244
TU122097 lncRNA upstream 257784 16906338 ~ 16912574 (-) False LOC122354244
TU122159 lncRNA upstream 350107 16998661 ~ 16998866 (-) True G82496
TU122308 lncRNA upstream 798605 17447159 ~ 17447681 (-) True G82578
XM_043251655.1 mRNA downstream 3985 16604004 ~ 16606580 (-) True LOC122353776
XM_043251654.1 mRNA downstream 16635 16591311 ~ 16593930 (-) False LOC122353775
XM_043252937.1 mRNA downstream 54890 16554408 ~ 16555675 (-) True LOC122354663
XM_043252241.1 mRNA downstream 137598 16431654 ~ 16472967 (-) False tbl1xr1a
XM_043252972.1 mRNA upstream 6578 16655132 ~ 16660615 (-) True LOC122354689
XM_043252532.1 mRNA upstream 117819 16766373 ~ 16769063 (-) True LOC122354367
XM_043252390.1 mRNA upstream 130358 16778912 ~ 16789710 (-) False LOC122354244
XM_043251397.1 mRNA upstream 241036 16889590 ~ 16891932 (-) True LOC122353589
XM_043252092.1 mRNA upstream 310349 16958903 ~ 16992270 (-) True lrig1
TU121711 other downstream 1208874 15400918 ~ 15401691 (-) True LOC122354564
TU121487 other downstream 1375509 15234488 ~ 15235056 (-) False LOC122354561
TU121492 other downstream 1396507 15204961 ~ 15214058 (-) True G82067
TU121170 other downstream 2074173 14534718 ~ 14536392 (-) True G81866
XR_006252040.1 other downstream 2158825 14442601 ~ 14451740 (-) True chrna4b
TU122317 other upstream 888949 17537503 ~ 17540171 (-) False G82585
TU122319 other upstream 889829 17538383 ~ 17540171 (-) True G82585
TU122326 other upstream 902027 17550581 ~ 17559836 (-) True G82588
TU122328 other upstream 925048 17573602 ~ 17576984 (-) True G82590
XR_006252134.1 other upstream 986252 17634806 ~ 17635665 (-) False LOC122354622

Expression Profile