RNA id: TU122328



Basic Information


Item Value
RNA id TU122328
length 1070
RNA type TUCP
GC content 0.54
exon number 3
gene id G82590
representative True

Chromosome Information


Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 17573602 ~ 17576984 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


aacacaccagacacatcCAGACCACAGACATGGCTCCGTAAGGGTGCACATGGCGGCTAGCAGCCATGAACCAAAAAACAACTCACCAAAAACTACAGATGCATCTCCGATTTGACTGATTTTCGATTGATCAACTTCCACATCCGCCGCAATATTCTTCAGTCCGGTTTTCAGCATTCGGGAGAGGGCTGCTCGCTTGCAACTCTCTCTTGTCTCCATTTCCTCCAGACAATTTTACGTTCTTACTCAACCCGAAATAACAGTAGACATCATATTGTACAACAACAATCATGGGTGTGCAGGGTTTCCAGGAATACATAGAGAAGCACTGCCCCAATGCCGTGGTGCCGGTGGAGCTCAGAAACTCGCCCGCGGGAGTCTGGTTGGCGGCGGCCGGCAGAGACCCCCTCAAACACCGCTCCGGCTGCTAGTGGACGCCGAGAACTGCCTGCACCGGCTCTACGGCGGCTTTTACACCGACTGGGTTAGCGGGGGCCAGTGGAACCACATGCTCGGGTACCTCGCCGCCCTCGCCAAAGCCTGTTTCAACGGCAACATCGAGCTGCTAGTGTGCTTCAATGGCGCCCTGGAGAAAGGCCGTCTCCACGAGTGGGTCAAGCGACAGGTGAACGAGAGGCAGACCGCCCAGCAGATCGTCAGCCACGTCCAGAACAAGGGTACCCCGCCGCCCAAGGTCTGGTTCCTGCCCCCGGTGTGTATGGCCCACTGCATCCGCCTGGCGCTCCTCAGGTTCCACATCGGGGTTGTCCAGACCATCGAGGATCATCACCAGGAAGTGATTGCCTTATTTCGAGAAAATGGGTTCCATGGCCTGGTTGCCTATGACTCTGATTATGCCCTGTGCAACATCCCATACTACTTCAGTGCCCATGCTCTCAAACTTAGCCGCAACGGCAAAAGCCTCACCACCAGCCAATACCTGATGCACGAAGTTGCCAAGCAACTTAATCTCAATCCAAAtcgttttgtcatttttgcttcACTTTTAGgGAATCACATACTGCCTGATGAAGACTTGGCTGCCTTTCACTGGAGTTTACTTGGCCCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU122305 lncRNA downstream 10592 17562141 ~ 17563010 (-) True G82577
TU122314 lncRNA downstream 27527 17534848 ~ 17546075 (-) True G82582
XR_006252055.1 lncRNA downstream 97591 17465158 ~ 17476011 (-) True LOC122353733
TU122308 lncRNA downstream 125921 17447159 ~ 17447681 (-) True G82578
TU122159 lncRNA downstream 574736 16998661 ~ 16998866 (-) True G82496
TU122354 lncRNA upstream 57819 17634803 ~ 17642527 (-) True G82606
TU122356 lncRNA upstream 58395 17635379 ~ 17642527 (-) False G82606
XR_006252135.1 lncRNA upstream 64052 17641036 ~ 17642527 (-) True LOC122354623
TU122371 lncRNA upstream 116935 17693919 ~ 17694508 (-) True G82619
TU122381 lncRNA upstream 133467 17710451 ~ 17710806 (-) True G82628
XM_043251424.1 mRNA downstream 118828 17449267 ~ 17454774 (-) True LOC122353607
XM_043251678.1 mRNA downstream 389483 17096321 ~ 17184119 (-) True suclg2
XM_043252092.1 mRNA downstream 581332 16958903 ~ 16992270 (-) True lrig1
XM_043251397.1 mRNA downstream 681670 16889590 ~ 16891932 (-) True LOC122353589
XM_043252390.1 mRNA downstream 783892 16778912 ~ 16789710 (-) False LOC122354244
XM_043251657.1 mRNA upstream 1341 17578325 ~ 17590223 (-) True LOC122353782
XM_043252880.1 mRNA upstream 57822 17634806 ~ 17640897 (-) True LOC122354622
XM_043252881.1 mRNA upstream 58326 17635310 ~ 17640897 (-) False LOC122354622
XM_043252879.1 mRNA upstream 58381 17635365 ~ 17640897 (-) False LOC122354622
XM_043252830.1 mRNA upstream 105076 17682060 ~ 17692681 (-) True LOC122354584
TU122326 other downstream 13766 17550581 ~ 17559836 (-) True G82588
TU122317 other downstream 33431 17537503 ~ 17540171 (-) False G82585
TU122319 other downstream 33431 17538383 ~ 17540171 (-) True G82585
TU121711 other downstream 2171911 15400918 ~ 15401691 (-) True LOC122354564
TU121487 other downstream 2338546 15234488 ~ 15235056 (-) False LOC122354561
XR_006252134.1 other upstream 57822 17634806 ~ 17635665 (-) False LOC122354622
XR_006252133.1 other upstream 58381 17635365 ~ 17635664 (-) False LOC122354622
TU122389 other upstream 137875 17714859 ~ 17716567 (-) False LOC122354587
TU122586 other upstream 431381 18008365 ~ 18048123 (-) True tafa4b
unassigned_transcript_1804 other upstream 993392 18570376 ~ 18570448 (-) True trnav-aac_24

Expression Profile