RNA id: XM_043251658.1


Basic Information

Item Value
RNA id XM_043251658.1
length 3850
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC122353787
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 17742916 ~ 17771610 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTATATGAGTCTGAAAAGAGAAGGGGAGCCCTCTGCTGGAGTTCAGGACTCGTTTTGTGGATTTTTAGGATGTGGTCTGAACTATCACAAGCGATGCGCCTTTAAGATCCCTAACAACTGTAGCGGTGTGAGGAAGAGACGTCTTTCCAATGTGTCTCTGCCCGGCCCGTCGCTGTCCGTTCCTCGTCCTGCTCCAGCAGAGCTTGCTGCCGTGAGCCTGGAAGAGCAGCGCCCTCATCAGGAGCCAGGAAAGCGGATACCATCATGGAGCGGCCGGCCAATCTGGATGGAGAAGATGGTGCTGGGGCGGGTGAAGGTCCCTCACACCTTCGTCATTCATACCTACACGCGCCCAACCATCTGTCAGTACTGCAAACGGCTGCTCAAAGGGCTTTTCCGCCAGGGCATGCAGTGCAAAGACTGCAAGTTCAACTGCCACAAGCGGTGTGCGTACAAGGTCCCAAACGACTGCTTAGGGGAGACTCTCGGTAATGAGTACATATTAAGTCCAAGCACAGACACGGAGGTGCCGATGGACTACAGTAATGAGTATTCTGACACTGATAAGTCATCTCTAATGGACGACTCAGACGAGGCCTGCAGTATCCCCGGGTCTTTCTCCCCAGACAGCAACCAGGATGGAGCCAGTGGAGACCAAAGTGCTAATATTCCTCTGATGAGAGTAGTGCAGTCGATCAGGCAGACCACACGTCGTTCTAGCACAGCCATCAAGGAGGGCTGGATGGTGCACTACAGCAACAAGGACACACTGAGGAAGAAACACTACTGGCGCCTGGACTGCAAGTGCATCATCCTATTTCAAAACGACACCACCAACAAATACTACAAGGAGATCCCGCTCTCCGAAATCCTGGAGGTCTGTCCGGCAGGTGATTTCTCTCTGGTCCCTCCAGGCACAAGCCCCCACTGCTTCGAGATCATGACGGGTACCATGATCTACTTTGTTGGTGAAGACCCCAACACCACCCCGTCTCCGTCATCCAATGTCTCTGGTCTGCCCATCTCCACCATCCCCAGCTGTGTTGCGCCCAACAGTGGGGTGGGACGAGAGTTTGCCAAAGGATGGGAGACTGCGATACGTCAAGCCCTCATGCCAGTCATCTTCCAGGACAACCCTCCAGCAGAAGGTCATGTTCCTCACCGGCAGGCATCAGTCAGCATCTCGGTGTCTAACAGTCAGATTCAGGAGAATGTGGACATTGGAATGGTCTATCAGATCTTTGCTGATGAGGTTCTGGGCTCTGGACAATTTGGTGTAGTGTATGGAGGAAAACACAGGAAAACTGGCCGGGATGTAGCCGTAAAGGTGATCGACAAGCTCCGGTTCCCCACCAAGCAGGAGAGCCAGCTGAGGAATGAAGTAGCCATATTGCAGAGCCTGAGACACCTGGGTATAGTGAACCTCGAATGCATGTTTGAGACGCCGGAAAAGGTGTTTGTGGTGATGGAGAAACTTCATGGTGACATGCTCGAGATGATCTTGTCGAGTGAGAAAGGACGACTTCCTGAGAGGCTCACCAAGTTCCTCATTACGCAGATTTTGGCTGCTCTGAGGCACCTTCACTTCAAAAACATAGTGCACTGTGACCTCAAGCCCGAGAATGTGCTGTTAGCATCAGCAGATCCTTTCCCACAGGTGAAGCTTTGTGACTTTGGTTTTGCTCGCATCATCGGAGAGAAGTCTTTCCGTCGTTCGGTTGTTGGCACGCCGGCATATCTGGCCCCCGAGGTCCTGCTGAACCAGGGTTACAATCGCTCTCTGGACATGTGGTCTGTAGGTGTGATTATGTATGTCAGCCTGAGTGGAACTTTCCCCTTCAATGAAGATGAAGACATCAACGATCAGATCCATAACGCCGCCTTCATGTACCCACCCAACCCATGGAAACAGATCTCTCCAGAAgCCATCGACCTCATCAATAACCTGCTGCAAGTGAAGATGAGAAAACGCTACAGTGTGGACAAGAGTCTCAGCCATTCCTATCTACAGGATTACCAGGCCTGGTTGGACCTCCGAGAGCTGGAGTCGAAGCTCGGGGAGCGCTACATAACCCACGAGAGCGATGACAGTCGTTGGCAGCAGTACGCCCGAGACCACACGCTGCCCTACCCTGCTCACCTGGTGCCCCCGCCACCCGCCTCCGACGACGACGAGCTCGAGGGAGCGGAGGACGCAGACATGCAGGGGCTGACGGAGCGCGTTAGCATCCTCTGAAGAAGAAACCGAGGAGAATGAGAGGAATGAAGAGTACCTGCTCGAACTCTAACGATTTTTTTAGTGCACCAGGAGCGCAGGAAGGCCATCTCTGACCTCTTTTCAGCCAGGACTGCTGCTGATCTGTTTGCTGGGATGCAGATATTAAGGTTGGGAAGGAACTGTTCATTGTAGTTATGTGCACAACAGAAACGGACTGTTTTTGGGTTCGACTTTCCCCTAACTAGACGTCTTTTTCAAGGTACGGTCACATTTACCGGTATTCTGCGTATTTTCGTAGGCGAAACCCAGTCAGTTTAATGGAAAAACACTCTAGAGGTAACTTAGGTTAGGACGAAAGATTTCATCATGCAGATTTCGCAACTGGTTCAAGTTGGTCGCACGTGTTCGCCACGTTTACCAAGAGACggctgcttggtttgaaagtgaaTTCTGTGTAAATGGAACTTCATAAACGGAAAGTTTGCTAATGTGACCGTGCCTTTAGGGGACAGTAGATACTGAGACgtggtttttaaaatttttaatatttgccacattttaaaaacttttcaagaaatttgaaaaaaaaacagcacaagatGCGACACAATGGCGAGAAACGTTTTTCTGAACGTGTCTTTCGTGGTGCTTTGAAGGCGATGAATAAACTATGTTTAAAGAGTTTTAATGGTCAAAACTAGGGTATGGTCACATTTACCGGTGCTCCTTACAAAATATGTGGCCGGAATCCAGTCATTTCAATACGAATCTTTAAAATCGGGAGTTGTTACTTCAACAGACTGCATTCAAGTTCGTGCGAATTTGCCGCAATGACCGAAAGAAAGTTGAAAAAAGACTTCTGTGTGAACGGTGCTTCATGCACggacaatacttttttttttctttttttttgcacacaaaatttCACCCAAATTTGTCATTGTGACCTAAACTGCTAAAGCGCGACATGCGTTTAACATGCAAATTAAAGTAGCggaaaaatctgtaaaaacgTCAGTCGATAAATCAGCATGACCCATCCCTAGTTTGTTTCACGATTGATGTCAAGCCGATAATCTCCAGGTCACAGGCAGTGTATTAATAATGATACAAacgaaaaggaaaaacaaaaaacgtatCTATTaatctggactttttttttttcattttttgctctGTGGTTAGTTTCAGATCCACTTTTGTTGCATATTACTGAGAACCTTTTTGCAAAATAACCTGGAAGAAATCGAAGAGTGGTGTTTTCCAGTATCGTCAGTGATTTGCCCTACAGGAACAGACAACTTCAACTCTGAGAATGGATGTTATCTTATGAGGACTGATAAGCAGGCTGCCCCTCGGCCTTATCAGCATACAAAACGATTGCACAAAGGCTACCTAGACCGATCAGCCGCCGTTAGCTAGTCCTAGCTGTGCTCGATGTGTATCCTTATTCCTAACTGACCCTAGACCTGAGCATTAGGCTGCATGTCACTGAGAATTAGGTTTGCTTGAAACTTATTGCTATGAAGGACTTTTTTGTACACATGTAACCTTAGAAATTCTGATGTAGTTTGTGGGAGGTAATGTCGGAGCGTTTCCAGCTGGTATAATAAACACGGTGATGCATAAA

Function

GO: NA

KEGG:

id description
K06070 PKD; protein kinase D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122388 lncRNA downstream 40802 17714859 ~ 17716567 (-) True LOC122354587
TU122381 lncRNA downstream 46563 17710451 ~ 17710806 (-) True G82628
TU122371 lncRNA downstream 62861 17693919 ~ 17694508 (-) True G82619
TU122354 lncRNA downstream 114842 17634803 ~ 17642527 (-) True G82606
XR_006252085.1 lncRNA upstream 47292 17818902 ~ 17819459 (-) True LOC122354075
TU122464 lncRNA upstream 47306 17818916 ~ 17819424 (-) False LOC122354075
TU122465 lncRNA upstream 48685 17820295 ~ 17820891 (-) False LOC122354073
XR_006252060.1 lncRNA upstream 341738 18113348 ~ 18122237 (-) False LOC122353822
XR_006252059.1 lncRNA upstream 347155 18118765 ~ 18122237 (-) True LOC122353822
XM_043252834.1 mRNA downstream 40673 17714752 ~ 17716696 (-) False LOC122354587
XM_043252830.1 mRNA downstream 64688 17682060 ~ 17692681 (-) True LOC122354584
XM_043252831.1 mRNA downstream 68480 17682060 ~ 17688889 (-) False LOC122354584
XM_043252880.1 mRNA downstream 116472 17634806 ~ 17640897 (-) True LOC122354622
XM_043252881.1 mRNA downstream 116472 17635310 ~ 17640897 (-) False LOC122354622
XM_043252067.1 mRNA upstream 30783 17802393 ~ 17805778 (-) False LOC122354069
XM_043252066.1 mRNA upstream 30783 17802393 ~ 17805778 (-) True LOC122354069
XM_043252069.1 mRNA upstream 38310 17809920 ~ 17813328 (-) True LOC122354072
XM_043252071.1 mRNA upstream 48663 17820273 ~ 17820936 (-) True LOC122354073
XM_043252070.1 mRNA upstream 48663 17820273 ~ 17820924 (-) False LOC122354073
TU122389 other downstream 40802 17714859 ~ 17716567 (-) False LOC122354587
XR_006252134.1 other downstream 121704 17634806 ~ 17635665 (-) False LOC122354622
XR_006252133.1 other downstream 121705 17635365 ~ 17635664 (-) False LOC122354622
TU122328 other downstream 180385 17573602 ~ 17576984 (-) True G82590
TU122326 other downstream 197533 17550581 ~ 17559836 (-) True G82588
TU122586 other upstream 236755 18008365 ~ 18048123 (-) True tafa4b
unassigned_transcript_1804 other upstream 798766 18570376 ~ 18570448 (-) True trnav-aac_24
unassigned_transcript_1806 other upstream 799541 18571151 ~ 18571223 (-) True trnav-aac_25
TU123313 other upstream 2395695 20167305 ~ 20171305 (-) True G83230
TU123804 other upstream 3058186 20829796 ~ 20839292 (-) True G83592

Expression Profile