RNA id: XR_006252085.1


Basic Information

Item Value
RNA id XR_006252085.1
length 339
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC122354075
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 17818902 ~ 17819459 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAAAAGTATCTTAGCAACGCTACTCGGAGCTTCTGTCATGGCGCCTCTGACGCCTTCTATTGTATTGAACCTGAGCGCGATTGGGAGGTTTCAAAtcgcacatttaaaaataccttGCATGATCGAATTAGACAACGAATAAGCAATGCCTCCGAAAAGGAGAGGACCTCTTCAGACGGTCCAAAGAGAAACGGATGACATCAAGAGAAAGGTGGACGCTTTGGTGCAGCATGCTGCTAAACCAGATGCGTCAGACAGGACTGAGACCCTGGAGAGGTGCAAAGAGTTACAGCGCGCTTTGGAGGAAATTATGAAGACTCTGAAGAAATTATCCAAAG

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122427 lncRNA downstream 60477 17742916 ~ 17758425 (-) False LOC122353787
TU122388 lncRNA downstream 102335 17714859 ~ 17716567 (-) True LOC122354587
TU122381 lncRNA downstream 108096 17710451 ~ 17710806 (-) True G82628
TU122371 lncRNA downstream 124394 17693919 ~ 17694508 (-) True G82619
TU122356 lncRNA downstream 176375 17635379 ~ 17642527 (-) False G82606
TU122465 lncRNA upstream 836 17820295 ~ 17820891 (-) False LOC122354073
XR_006252060.1 lncRNA upstream 293889 18113348 ~ 18122237 (-) False LOC122353822
XR_006252059.1 lncRNA upstream 299306 18118765 ~ 18122237 (-) True LOC122353822
TU122603 lncRNA upstream 306529 18125988 ~ 18133130 (-) True G82753
TU122621 lncRNA upstream 316425 18135884 ~ 18137373 (-) False mustn1b
XM_043252069.1 mRNA downstream 5574 17809920 ~ 17813328 (-) True LOC122354072
XM_043252067.1 mRNA downstream 13124 17802393 ~ 17805778 (-) False LOC122354069
XM_043252066.1 mRNA downstream 13124 17802393 ~ 17805778 (-) True LOC122354069
XM_043251658.1 mRNA downstream 47292 17757369 ~ 17771610 (-) True LOC122353787
XM_043252834.1 mRNA downstream 102206 17714752 ~ 17716696 (-) False LOC122354587
XM_043252071.1 mRNA upstream 814 17820273 ~ 17820936 (-) True LOC122354073
XM_043252070.1 mRNA upstream 814 17820273 ~ 17820924 (-) False LOC122354073
XM_043251597.1 mRNA upstream 189030 18008489 ~ 18047882 (-) False tafa4b
XM_043252901.1 mRNA upstream 232554 18052013 ~ 18064487 (-) False eogt
XM_043252900.1 mRNA upstream 232554 18052013 ~ 18062993 (-) True eogt
TU122389 other downstream 102335 17714859 ~ 17716567 (-) False LOC122354587
XR_006252134.1 other downstream 183237 17634806 ~ 17635665 (-) False LOC122354622
XR_006252133.1 other downstream 183238 17635365 ~ 17635664 (-) False LOC122354622
TU122328 other downstream 241918 17573602 ~ 17576984 (-) True G82590
TU122326 other downstream 259066 17550581 ~ 17559836 (-) True G82588
TU122586 other upstream 188906 18008365 ~ 18048123 (-) True tafa4b
unassigned_transcript_1804 other upstream 750917 18570376 ~ 18570448 (-) True trnav-aac_24
unassigned_transcript_1806 other upstream 751692 18571151 ~ 18571223 (-) True trnav-aac_25
TU123313 other upstream 2347846 20167305 ~ 20171305 (-) True G83230
TU123804 other upstream 3010337 20829796 ~ 20839292 (-) True G83592