RNA id: TU122586


Basic Information

Item Value
RNA id TU122586
length 2900
RNA type TUCP
GC content 0.44
exon number 6
gene id tafa4b
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 18008365 ~ 18048123 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTTAATTTCAGCTGGCAAGCTCAACCTTGAGGGGCTGCGACTGGCTATTGATAACATCATTTGCCACATGATAGAAGTCCCCGGCTATGAAACCGAACGAAACAGACAAAATAGATCTCCAAAGGATTAACCTGTTTGAGCACgcggtaaaaaaacaaaacaaaaaaaaaaccccgctGCGCTTCTAGACGGGCGGGTTGGAggcgtacaaaaaaaaattagaaaccTTCTCGCCCACTTTTTCTTGCCGGGCTCGTCGTTCCAGCGCAGCCGCTCGCTTCAGCACTTGTAAACTATGACATCAGTTAGCTCGGCTACTTGAAAGATCGCGCGCGGGGCCGGGGTGCAGCCGACGCACGTGCGCTGAATAGGCAAGGCAAGTTCGCAATTCTCTTGTCAAATCGATCGCAGCTCGGGAGGAGTGCGCGAGGCGCAGTTATCATCGCAGACTTCCCCATCACTCACAGTCCCAGCGGTTCCGCGGGAAGACAGCTGTTAATAACCTAACAAGCATGTCTGGAACATTATAAGGTCATTAGTCTACTAACCCCCTTATGGATTTACGCACTTCTTTTCTGAGGTTCAAACGCTGACGGCGCTCTTCGCGTTTCCTTTCCCGTCCTCTTTCGTTCGTCTCGCCGGTGATGTGTGGCGAAGAGATTCGCGAAATAATGGGCACGTTCGGTTTGTGAACTCCCCCGTTCTGCTCTCCGCGTAACGGACAGGCGGCTATTGAGCTGGAGCGAGTAGAAAGTGAGCTCGTTTAAAGAGAACATCTGTCTTCAGGACTCCTGCCACGTTTTGAAGCAAGAAGGATGCCCTCGCTTTCATAAACGGAGGATCTGAACAGTGATTGAGGAAGCGAGTGAAGGCAGAGGAGGACAAAGAAGGAGACATGGCCGGCTCACAGGGAAGAGAGTGAACAGAGAACACAGGACAGAAAGATGAAGCTGTGGGGGCAGTCGCTGTGGCCATTACAGGTTGTAGTCTTGGTCACCTTGGTAATGTGCTCATGCCAGTCGGTTTCTGCGGGTACACGGAGTCTGCGGGGACACACAGcttCGTACCAGGTGAAGCAGGGAACCTGTGAGGTGGTGGCCATCCACCGGTGCTGCAATAAGAACAAGATAGAGGAACGTTCACAAACCGTCAAGTGCTCCTGCTTCCCTGGTCAGGTGGCCGGTACCACACGTGCACAGCCTTCTTGTGTGGAGGCTTCCATCGTGCTGCAGAAGTGGTGGTGCCAAATGCACCCATGTTTGGATGGCGAGGAGTGTAAAGTTCTTCCAGACCTTACTGGTTGGTCCTGCAGCACCGGTAACAAAGTCAAAACCACCAAGGTCACTCGATAGCAAGAACATTGTTGCAGTACCAAGATGCCCAAGACTCCTTACTAACTCCTAATGGAAAAGAAGACCCTCTTGTTTAAGACACTGACATTACAGAGGATACCATATATATGAAAGATGGACAAACTCACTGTAGACTATAGATGGCTACCTTGCTCTGACAGAAGACATGAGGATGGACAAGGATCTCTGTATAAACCAGAGGTTTGAATGAAGATGCTGGACATGTGCTCCTGTGAGAGACTGCATTTGTCAGCTGACAGTGACTTTTTGGATTTCCACTGGCTctcttgtgtgtatgtgtgtgcatgtgtgagacAGACAGTAGGACGTGAGACTTGTAGGACAAACTGTGGTCAGTTCAGACCTGTCTTGGagcttgtgtgtctgtgtgtaagtgtgtgttagTCAGGTCGATGATGATGAGACAGTAGTTGAACACTGTTCATCCGCTTTCCAGCACACAGCAAACTTTATATTCATGTGTAGGGTGGGGATTGCTCTGAATGTGTGATTCACAAGTTATCAAATTTCTCTTTTGGGTCAAATGTttcctttaaattattttgcacTTCTAATTAGGGTTGTTAAATAGGATCAtaacagcaaattaaaaatttattacttttttgcaCTAGATAAGATCATATGGAGACGTTTTCCATTTTCTAGTCTTTTACTGTCCGTGTAAGATGGAATTCAAGAGAGAAACATTTACTAAGCTTCCTTCCACAAATGCGCAAAGTAGAAATGCAAGTGATGTAGCCATCAGTAAAACAATGGTAAACTGCAGTAAAATACAGCTCCTCCTTGCTGTAAAATGTTACGTAATGTGAGCTTTACAGATGCAATCCCCTTcaaaaaactcttaaaactgACAGCTGGCTAAAAACATCTATGTTACTCTGTAAAAAGATCCACAAAAAATTTAAAGGTGCACTAagtacatttttactaaaataaaacctaaattaatcacaattaacttatgatgacttaaaaaaataaaagcttattttattcTACAAATGGCACATCGGACCATGATGCTTTGATCACGTGACCTGCCAAATACAACTATTACCAGAAACTGTTGGTTTCAGAATAAATGCatctacataaaaaaactaaaaacttttacattacaGCCATGCCACTAGGTGTCAGTATAAAATCCAAGTGATCTGTAAGTGAAACATAACACGAAAGTTACTTGGTGcacttttaaacaaagaaacacagtatattgtttttaacattctGCTTTCTGGTTTAACTGTGACTCAAAAGTACTCTGTGAACAAAAAGTACTCTGAAAACAGGCTAGCAACTGAGATGATGAACATGTTTAAAGATAAGCTCCAATGTGAAGAGGCATAACTCATGCCCAATACTGCAACGAAATAAAGTTTGAAATAGAATCAGCTCCACCATTCATCACTGGTTTTCTAATCTCAATGTGTTCCTCCACAGACTCTAAACTAACCTAAACTTGAATTCTGAACTCTAATCGGTCCTTTTGTTCGCTCTTGCCAAGCATTACCTTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122465 lncRNA downstream 187474 17820295 ~ 17820891 (-) False LOC122354073
XR_006252085.1 lncRNA downstream 188906 17818902 ~ 17819459 (-) True LOC122354075
TU122464 lncRNA downstream 188941 17818916 ~ 17819424 (-) False LOC122354075
TU122427 lncRNA downstream 249940 17742916 ~ 17758425 (-) False LOC122353787
TU122388 lncRNA downstream 291798 17714859 ~ 17716567 (-) True LOC122354587
XR_006252060.1 lncRNA upstream 65225 18113348 ~ 18122237 (-) False LOC122353822
XR_006252059.1 lncRNA upstream 70642 18118765 ~ 18122237 (-) True LOC122353822
TU122603 lncRNA upstream 77865 18125988 ~ 18133130 (-) True G82753
TU122621 lncRNA upstream 87761 18135884 ~ 18137373 (-) False mustn1b
TU122680 lncRNA upstream 149706 18197829 ~ 18198369 (-) False fgd5a
XM_043252071.1 mRNA downstream 187429 17820273 ~ 17820936 (-) True LOC122354073
XM_043252070.1 mRNA downstream 187441 17820273 ~ 17820924 (-) False LOC122354073
XM_043252069.1 mRNA downstream 195037 17809920 ~ 17813328 (-) True LOC122354072
XM_043252067.1 mRNA downstream 202587 17802393 ~ 17805778 (-) False LOC122354069
XM_043252066.1 mRNA downstream 202587 17802393 ~ 17805778 (-) True LOC122354069
XM_043252901.1 mRNA upstream 3890 18052013 ~ 18064487 (-) False eogt
XM_043252900.1 mRNA upstream 3890 18052013 ~ 18062993 (-) True eogt
XM_043252416.1 mRNA upstream 16805 18064928 ~ 18074537 (-) True tmf1
XM_043252418.1 mRNA upstream 27467 18075590 ~ 18082073 (-) False uba3
XM_043252417.1 mRNA upstream 27467 18075590 ~ 18082070 (-) True uba3
TU122389 other downstream 291798 17714859 ~ 17716567 (-) False LOC122354587
XR_006252134.1 other downstream 372700 17634806 ~ 17635665 (-) False LOC122354622
XR_006252133.1 other downstream 372701 17635365 ~ 17635664 (-) False LOC122354622
TU122328 other downstream 431381 17573602 ~ 17576984 (-) True G82590
TU122326 other downstream 448529 17550581 ~ 17559836 (-) True G82588
unassigned_transcript_1804 other upstream 522253 18570376 ~ 18570448 (-) True trnav-aac_24
unassigned_transcript_1806 other upstream 523028 18571151 ~ 18571223 (-) True trnav-aac_25
TU123313 other upstream 2119182 20167305 ~ 20171305 (-) True G83230
TU123804 other upstream 2781673 20829796 ~ 20839292 (-) True G83592
XR_006252084.1 other upstream 3180219 21228342 ~ 21349094 (-) False kaznb

Expression Profile