RNA id: TU122680


Basic Information

Item Value
RNA id TU122680
length 541
lncRNA type sense_over
GC content 0.34
exon number 1
gene id fgd5a
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 18197829 ~ 18231521 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTAAATGAAGTGAGCTGTACATTTTACACTTcagtgtaatatatttaatttgcagtTGTATTAAGATATTGCTATCATCTGCTGTGATTCATTTTTCTCTGCACATTTGGTAGTTATTTCACCATGATCCCCAAGCTGACTTTGTTCCCATATAAACATCACCATGCCAACCATTGTTTTCACTAGAATACCACTAGAGTTATTGTTACTACGGTGAAGCTGTGCTAATTTGACATTAGTCACCACCACCGACAACTCATAacgataaaaacatttaaattttgaatatGATCCTATATGCATTTGGTATAATTACTTCAATATTAACAACTATGGTGTGTGGTCAGAAACAATGGTTACTATGGTAATTTTATGTAAGGATGATTGTATGTGCCACGGTGCATACATTTGAAGGCCACATTTGGTAAAAAGTCAATGTAAATCAGTATGCAAATGTTGTGAACATCTGTGTCAGTTGaacctttcattaaaaaaagtgaactttTTATTTAGGACATCACCTAAAGCATGTTATTCccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122621 lncRNA downstream 60456 18135884 ~ 18137373 (-) False mustn1b
TU122603 lncRNA downstream 64699 18125988 ~ 18133130 (-) True G82753
XR_006252060.1 lncRNA downstream 75592 18113348 ~ 18122237 (-) False LOC122353822
XR_006252059.1 lncRNA downstream 75592 18118765 ~ 18122237 (-) True LOC122353822
TU122465 lncRNA downstream 376938 17820295 ~ 17820891 (-) False LOC122354073
TU122892 lncRNA upstream 411355 18609724 ~ 18610059 (-) True G82918
TU122908 lncRNA upstream 465052 18663421 ~ 18664517 (-) False G82932
TU122910 lncRNA upstream 465052 18663421 ~ 18664566 (-) True G82932
TU122912 lncRNA upstream 500883 18699252 ~ 18699565 (-) True G82934
TU122932 lncRNA upstream 633807 18832176 ~ 18838951 (-) True G82950
XM_043252482.1 mRNA downstream 5043 18173645 ~ 18192786 (-) True prkcdb
XM_043252617.1 mRNA downstream 25604 18154085 ~ 18172225 (-) True sfmbt1
XM_043251867.1 mRNA downstream 44661 18143853 ~ 18153168 (-) False stimate
XM_043251866.1 mRNA downstream 44663 18143853 ~ 18153166 (-) True stimate
XM_043251874.1 mRNA downstream 60441 18135884 ~ 18137388 (-) True mustn1b
XM_043251507.1 mRNA upstream 53702 18252071 ~ 18272040 (-) False dido1
XM_043251508.1 mRNA upstream 53702 18252071 ~ 18272038 (-) False dido1
XM_043251502.1 mRNA upstream 53702 18252071 ~ 18272038 (-) False dido1
XM_043251504.1 mRNA upstream 53702 18252071 ~ 18272038 (-) False dido1
XM_043251505.1 mRNA upstream 53702 18252071 ~ 18272038 (-) False dido1
TU122586 other downstream 149706 18008365 ~ 18048123 (-) True tafa4b
TU122389 other downstream 481262 17714859 ~ 17716567 (-) False LOC122354587
XR_006252134.1 other downstream 562164 17634806 ~ 17635665 (-) False LOC122354622
XR_006252133.1 other downstream 562165 17635365 ~ 17635664 (-) False LOC122354622
TU122328 other downstream 620845 17573602 ~ 17576984 (-) True G82590
unassigned_transcript_1804 other upstream 372007 18570376 ~ 18570448 (-) True trnav-aac_24
unassigned_transcript_1806 other upstream 372782 18571151 ~ 18571223 (-) True trnav-aac_25
TU123313 other upstream 1968936 20167305 ~ 20171305 (-) True G83230
TU123804 other upstream 2631427 20829796 ~ 20839292 (-) True G83592
XR_006252084.1 other upstream 3029973 21228342 ~ 21349094 (-) False kaznb

Expression Profile