RNA id: XM_043251233.1


Basic Information

Item Value
RNA id XM_043251233.1
length 1522
RNA type mRNA
GC content 0.54
exon number 3
gene id smug1
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1548025 ~ 1551955 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCCCGTCGCCGGCGGTAAAGCGCCATGAACGCGCCTCAGAAGAAGAAGCTCCCAGCGTGCACCGCGGTGCCGCGGCTCTTTTGTTGCCGGAAACCTCGCGGAGACGATGCAGTCACGTCCCGAAGTCGAGAGTGGAGACGCGTCCGCTCGGGACCCCCCCGGCCTGCCGGACCTGGCCGCCGACCGGCTCTTTAACGGCTCCACCGCCGCCTCCAGGTTCCTGAGGGCCGAGCTGGAGCTGAACGCGCGCTTGCGGACGCTGACGTTTGGGAAACCGGTGCGGTACACCTACAACCCGCTGGAGTACGCCTGGGACACGCATCGCTGTTACGTGGAGAAATACTGCCAGGAGGGCCAGAGCGTCCTCTTTCTGGGCATGAACCCAGGGCCGTTCGGCATGGCACAGACAGGGGTGCCGTTCGGCGAGGTGAAGGCCGTGCGCGGCTGGCTGCAGATCACCGGAGCGGTGGGCCGTCCGCCGGAGGAGCATCCCAAGAGACGGATCGCGGGCCTGGAGTGCACTCAGAGCGAAGTGAGCGGAGCCCGCTTCTGGGGCTTCTTCCGAGAGCTCTGCGGGGAGACGCACAACTTCTTCCGCCACTGTTTCGTGCACAACCTGTGCCCCCTCATCTTCATGAGCGAGTCGGGGAAGAACCTGACCCCGCCGGAGCTCGCGGCCGCCGAGCGCGACGCCCTGCTGTCCTGCTGCGACGGCGCTCTCTGTCAGGCGGTCGGCGCGCTCGGGGTCTCCATGGTGATCGGGGTGGGCAGGCTGGCCGAGCAGCGCGCTCGACGGGCCCTCGCTGGGGCCGGCCTCGACGTGAGGGTGGAGGGGATCATGCATCCGTCCCCCAGGAACCCGCTGGCTAATAAAGGATGGGCTGCCGTAGCCAGAGACAAACTAGATCGTCTGGGGGTGTTAGCTTTACTGACCAGCGCCGGCTGATGATAAACCGCATGAACATCAActttattttaacctttaaccAGTACTTTATCACAcaggtattatttatttgtggtaattatattttatatcatttgttttttattagcaGAGGAtctttttgtctgtattttattttgtggagATAACACTGTAgatattactgtatattagtCTCTGATTATAACACTAAGGTAGCCACGTCTTTGCCGtcgagtgatttttttttgtcgttgttTCGTGAGATGAACGTATAGACTCGTATCTATAGAATCCCGTCTCACGCTCAGCACCATCCTTTCATTTCGTGTTCTTCTCTTAACAGAAGTGTTTTCTAGAAATACTTGCTTGGACTTTTTAATGGACATGTATAAACATTCATGCTCGTATTCACAGAGTGTTGGATTTTTTACTTGAGTactaatatacttaaaatatatagagCTCACACTAAGCGTGCTTCTAATGCGTTAACATATATACACTCGAGACTTAATTCATCTTTGTGTGGAGTACTGCTTGTGCACAAGTCACAGTATTAACGTTAAGATTAAAACTACGTGATCTTTGATCAA

Function

GO: NA

KEGG:

id description
K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116271 lncRNA downstream 34122 1512836 ~ 1513903 (-) True G78574
TU116270 lncRNA downstream 35793 1512005 ~ 1512232 (-) True G78573
TU116269 lncRNA downstream 36499 1510981 ~ 1511526 (-) True G78572
TU116244 lncRNA downstream 99020 1444615 ~ 1449005 (-) True G78549
TU116250 lncRNA downstream 112096 1434638 ~ 1435929 (-) True G78555
TU116306 lncRNA upstream 36749 1588704 ~ 1681160 (-) False LOC122354408
TU116313 lncRNA upstream 41279 1593234 ~ 1681160 (-) False LOC122354408
XR_006252086.1 lncRNA upstream 187745 1739700 ~ 1741018 (-) True LOC122354127
TU116534 lncRNA upstream 371750 1923705 ~ 1924282 (-) True G78726
TU116575 lncRNA upstream 931715 2483670 ~ 2484844 (-) False LOC122354525
XM_043252013.1 mRNA downstream 18843 1519332 ~ 1529182 (-) False calcoco1b
XM_043252015.1 mRNA downstream 18845 1519332 ~ 1529180 (-) False calcoco1b
XM_043252012.1 mRNA downstream 18845 1519332 ~ 1529180 (-) True calcoco1b
XM_043252014.1 mRNA downstream 18923 1519332 ~ 1529102 (-) False calcoco1b
XM_043252732.1 mRNA downstream 76777 1459574 ~ 1471248 (-) True nr1d4b
XM_043251499.1 mRNA upstream 6540 1558495 ~ 1564655 (-) False hnrnpa1a
XM_043251498.1 mRNA upstream 6540 1558495 ~ 1564655 (-) False hnrnpa1a
XM_043251497.1 mRNA upstream 6540 1558495 ~ 1564655 (-) True hnrnpa1a
XM_043251480.1 mRNA upstream 13705 1565660 ~ 1587830 (-) False znf740a
XM_043251479.1 mRNA upstream 13705 1565660 ~ 1587830 (-) False znf740a
TU116011 other downstream 325559 1217451 ~ 1222466 (-) False phactr3b
unassigned_transcript_1591 other downstream 383684 1164270 ~ 1164341 (-) True trnac-gca_119
unassigned_transcript_1590 other downstream 384371 1163583 ~ 1163654 (-) True trnac-gca_118
unassigned_transcript_1589 other downstream 384591 1163363 ~ 1163434 (-) True trnac-gca_117
unassigned_transcript_1588 other downstream 385020 1162934 ~ 1163005 (-) True trnac-gca_116
XR_006252099.1 other upstream 152669 1704624 ~ 1716129 (-) True nab2
XR_006252142.1 other upstream 310732 1862687 ~ 1862826 (-) True LOC122354691
XR_006252152.1 other upstream 313052 1865007 ~ 1865147 (-) True LOC122354701
XR_006252144.1 other upstream 315315 1867270 ~ 1867409 (-) True LOC122354693
XR_006252143.1 other upstream 317592 1869547 ~ 1869684 (-) True LOC122354692

Expression Profile