RNA id: XM_043251472.1


Basic Information

Item Value
RNA id XM_043251472.1
length 4201
RNA type mRNA
GC content 0.47
exon number 17
gene id znf740a
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1565660 ~ 1587830 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATTTCTTGCTGCCGTGTCGTCACAGCTCGCGAGCACCTCGTGACGTTGCAGCCAATGTGCGCGTTCCCGTGGAGCTTTTCCGGTGGCGTTTCCTGTGTTTGTAAACTGACCAGAGCTGGAATAAAAGAGCGAAATCGAGCAGTACCGAGAAAAGACCTTGCCGCCCCATGATAGAGACTGGAGGGACGTGTGAGACACTTGGTCCGAACTGACGTCTTGTCTGCGCATCTCGCCCGTCTCCCGCCGCCATGTCACACATACCCGGCAGCTCGGTCCGGGACCACATGAAATGGGCAGGGCTGTTGGGATGTGAAGCGGTTCTGTCCAGCATGGCTCTGATGCAGGCCAGCTCCATCGCCGCTCCTAAGAAAATGATGTCGCCCTTGGGTCCGGCTTCGGGCCACGGTTCGGCCCAGAGGGACGCGCAGGACCGCGGGGTGCAAGGACACATGGTCCTACCGACGAGCATGACCTGCCCTCCACTGGTTAGGGGACACCTTCAAGCTATAGATTTTAGAGATGCACCGATTGGCCGGGGACCGGAGTCCTCCGTTTTTCCGCATGATCGGCCGCTTCTGCGGAAGGAGGCTGATTTTACGGCTCCCCGTCTGCTGGATGAGAAGGAAATGAGACCCGGTGAAGACATGCAGCTGAAGAAAAAGAACAGGAAGTCGGGAACACCCTCAAAAGCGGTCGTGGACGAAAACGGAAACTGTCCACTTTCAAAAGTCCAGAAGAACTTTATCTGTGATCACTGTTACGGGGCCTTCAGGAGCGGATATCACCTGAAGAGACACATTCTCATTCACACCGGAGAAAAGCCGTTCGCCTGTGCCGTGTGTGACATGAGATTTATCCAGCGCTACCACTTGGAGCGACACAGCCTCACTCACACTGGAGTGAAGCCGTATGCTTGTTCCATGTGTGACATGCGGTTTTTCCAACGTTACCACTTGGAGAGGCACAGCCTCACTCATACTGGGGTCAAACCATATGCTTGCACCATGTGTGACATGAGATTTTTCCAAAGATACCACCTTCAGCGACACAGCCTCATTCATACGGGGGTGAAGCCGTATGCTTGCTCCATGTGTGACAGGCGTTTTTTCCAACGTTACCACCTCCAGAGACACAGCCTCACTCATACGGGAGTGAAGCCGTATGCTTGTTCCATGTGTGACATGAGGTTTTTTCAGCGTTACCACCTGCAGAGACACAGCCTAACCCATACGGGGGTGAAGCCCTTTGCTTGCACAATGTGTGATATGAGGTTTTTCCAACGCTACCATCTCCAGAGACACACCATCACCCACACGGGAGTGAAGCCGTATGCTTGTTCCATGTGTGACATGCGTTTTTTCCACCGTTACCATCTGCAGAGACACAGCCTCACTCATACTGGGGTGAAGCCTTATGCTTGCACCATGTGCGACATGCGTTTTTTCCAACGCTACCATCTACAGAGACACAGCCTCACCCACACGGGGGTGAAGCCGTATGCTTGCTCGATGTGTGACATGAGGTTTTTTCAGCGTTACCACCTGCAGAGACACAGCCTCACTCATACGGGGGTGAAGCCGTATGCTTGCTCGATGTGCGACATGCGGTTTTTCCAACGTTACCACTTGGAAAGACACAGCCTGACTCACACTGGAGAGAAGCCGTTCGCTTGCGACATGTGCGACATGCGGTTCATTCAGAGGTACCACCTGGAGAGACACAAGCGCGTTCACAGCGGTGAAAAGCCGTACCAGTGTGAACGCTGCCAGCAGAACTTCTCGCGGACAGACAGACTGTTGAGACACCGGCGACTGTGTCAGGGTCGTGGCGTGGCCAAAGTGGAGGCCCAGCCTTGTTCTTTCACCCAGGAGCCTCCCGCAGCCCCTCCGTCCACGTGGAGTCCTCTACATCCCGCCCCGGGCCGGCTCGCCGTCTGACTCCATGCTCCCGAGACGACCGCTCACCCAGACCTCTCTCGCAGCCGCCGGCTCCGTGGCGCCACCTGCCGCCTGAGAGATGCGCTGCAGACAGGATGAGGGGAAATCCTcctcttttgtttctttatttagaAACAAACAAGGTTCTCTTTTGATCCTTGAGGGTTGTTTTATACTTTTTGGTAATATATTAGGGGGTTTACGGTACTTTTAAGAAGcggagaacaaaaaaaaacacctaacaTGGGAATTTCATGTTACTaaccaaaagaaacaaaaggtaCAACCCATCATCTATCGACTGACACCTATTGATACACACTTCACGTAAGATGTAACACCACCGTTGTGTGATAAACTTAGCATCGTGTGTGATGTATAGGCCTGCTGTAAAGTGCTATGGGTGAGTACCCTACTGTCCTGAGGACTCAGGTAACGTCCTACAACCATCGCCAGATCCGTTTGTAACACTGTACCCATGTGTAACCATATGGAAATGCACAGTGCGCTTCCACGTATTAATTCATTAAGCAATCACAGGCTTTTTTCTCAATGATAAATGTTTGATCTGATATTGTAATTATGTATGACTCTGAAAGATGTGTATATTACTATGTGTGACAGCTGGTTTGTTCTCCGTCATTGGCGTGAGCTGGTGGGAACGACGACCGCTCTCTGGAAGCGTCCCTTTCTCTGACGTCGCTCGCTTAACGACCGGCAAATCTCGCAAGACCCGTCGAGGCCATGTTTTGGGGTCCCCGCCACCATCGGTTTTGACGCCATTAGGGTTTTCGTTCTTACAGTATTTTCCATGAACGTTTCGATGTTCTGcgttaaaataacactttttggCTCTATTCGGGCAATAGGAGCTGTCAATAACATCCCTTTTCTTGAGAAGTCGGCTGGTTGCGTTACGTAACGagaaataccattttttttaacgcTAAAGATTTGCTTCCCCCTTCCTGATTTGAGCGACACATGGCCGAGAGACGCTCTTGTGAGATTTGTGTAGAGTTAATGCATCTACACGGTCAATGACGCAATGAAAACATCCGAAAGCCCCGCAATTTCATGTACAGATTTATATGTGCGACATATAATAAGATCTTGTGGCCTTAGGGTGTATTCGTgcgcattttgtttttttttacgccaTAATTATATACGtattattttactgaaatatcGACATGGAGACGGACGGTCTGCCTGGTGTTTTCTTTCCAAAGTTATTTTAACGTTATATTGCCTTGTGTTGAAGCACAGCTGTGTTGAAATATCTCTCGATATAGATTCGTTGTTTCGTTGTAATATCCGAGAAGGAGTGGAGGTTTCCGGCGTGACGTGGCAGCGTTGTCTTACGTATCTTACGGATCTTCGTATGCAATGCCCTTCGCTACACGTGGGCCACCAATCAGACGACGAGGAGAGATCTGATGTTATTGTTGCACCAAATGATATTGTATCCGTCAGTTTATTAACTTCTCATTCTATCGTTAACATGATATCTGCTGTTGGACGAGAGTCTCGTCTGTATTTTTTAAGAGCTGATGGACAACTAGGGATCGAGTCGGGCATTTCCTCGCATCAGAATGCTTTCTGGCGACTACCAAGAGTATATCTTTAGAGGGATGTCTGCCGTTTATTGACAGAAGATTGCTGCATTTCTTTGTAACGActgaatatttttctttgtattgtTACATGTTTATATACTGTAACCGAATTGGTTAAACCTTTTAGTTCTATAGTAACGATCTTTGTGTATTTTAAGGACCTTTCTAtgctaatataattttaaaacactggAGAGAAACGTGTGAAACCATCATCTCTATACATATACagttgaagaaacacacacatacgtagTCGGTGGTTGCTAATCAAAGCGTCTCTCCACATTTTGCCGTTCGCATACTCTGACTTGAGAGAAAGAAGCAATAGAAGTCAAgccttttaaattatttcatgcatttactTGGACAGAGAAAGATTATCAGTAGTAGTTAACAaatcatcactttttttttactactttttctTCTTGCATGATACTGCAGACGGTGATTCAACAACTTCACTGAATTGCTTATCTTCAGCTGAGGgtgttttccaaaaaataataataataataatccgaTAGCAAAAGAAACGTTTTGTTAACTGACACTTCggtaacatttgtttttgtgagaaGACCAGAGTTGCTTactttatgcataaataaaatactaaataaaatgtgtggtTTTCA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116271 lncRNA downstream 51757 1512836 ~ 1513903 (-) True G78574
TU116270 lncRNA downstream 53428 1512005 ~ 1512232 (-) True G78573
TU116269 lncRNA downstream 54134 1510981 ~ 1511526 (-) True G78572
TU116244 lncRNA downstream 116655 1444615 ~ 1449005 (-) True G78549
TU116250 lncRNA downstream 129731 1434638 ~ 1435929 (-) True G78555
TU116306 lncRNA upstream 874 1588704 ~ 1681160 (-) False LOC122354408
TU116313 lncRNA upstream 5404 1593234 ~ 1681160 (-) False LOC122354408
XR_006252086.1 lncRNA upstream 151870 1739700 ~ 1741018 (-) True LOC122354127
TU116534 lncRNA upstream 335875 1923705 ~ 1924282 (-) True G78726
TU116575 lncRNA upstream 895840 2483670 ~ 2484844 (-) False LOC122354525
XM_043251499.1 mRNA downstream 1005 1558495 ~ 1564655 (-) False hnrnpa1a
XM_043251498.1 mRNA downstream 1005 1558495 ~ 1564655 (-) False hnrnpa1a
XM_043251497.1 mRNA downstream 1005 1558495 ~ 1564655 (-) True hnrnpa1a
XM_043251233.1 mRNA downstream 13705 1548025 ~ 1551955 (-) True smug1
XM_043252014.1 mRNA downstream 36558 1519332 ~ 1529102 (-) False calcoco1b
XM_043252583.1 mRNA upstream 69466 1657296 ~ 1661964 (-) False slc2a10
XM_043252582.1 mRNA upstream 69466 1657296 ~ 1661964 (-) True slc2a10
XM_043252572.1 mRNA upstream 76332 1664162 ~ 1678195 (-) False dgkab
XM_043252569.1 mRNA upstream 76332 1664162 ~ 1678194 (-) True dgkab
XM_043252575.1 mRNA upstream 76332 1664162 ~ 1678193 (-) False dgkab
TU116011 other downstream 343194 1217451 ~ 1222466 (-) False phactr3b
unassigned_transcript_1591 other downstream 401319 1164270 ~ 1164341 (-) True trnac-gca_119
unassigned_transcript_1590 other downstream 402006 1163583 ~ 1163654 (-) True trnac-gca_118
unassigned_transcript_1589 other downstream 402226 1163363 ~ 1163434 (-) True trnac-gca_117
unassigned_transcript_1588 other downstream 402655 1162934 ~ 1163005 (-) True trnac-gca_116
XR_006252099.1 other upstream 116794 1704624 ~ 1716129 (-) True nab2
XR_006252142.1 other upstream 274857 1862687 ~ 1862826 (-) True LOC122354691
XR_006252152.1 other upstream 277177 1865007 ~ 1865147 (-) True LOC122354701
XR_006252144.1 other upstream 279440 1867270 ~ 1867409 (-) True LOC122354693
XR_006252143.1 other upstream 281717 1869547 ~ 1869684 (-) True LOC122354692

Expression Profile