RNA id: XM_043251529.1


Basic Information

Item Value
RNA id XM_043251529.1
length 726
RNA type mRNA
GC content 0.50
exon number 4
gene id map1lc3c
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11597790 ~ 11599698 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGACGTGACGTCACGGCCGGCGCGTTATTTAATTAGAGCGTCGGCGCGCGACTCGGCTAATTAGCGCGCGCGCGGGTCAGAGGTGCCGCACGACATGCCTCCGTTAGAGAAAGCGCCGTATCCCAAACCCTTCAAACAGAGGAAGAGTTTAGCGACGAGGAAACAGGAGGTGGCGGGAATCCGGACCAAGTTTCCGACCAAAATCCCGgtgatcATCGAGAGATATCAGAGAGAGAAGTACTTGCCGCCGCTGGATAAGACCAAGTTCCTCGTCCCTCAGGAGCTCACTATGACTCAGTTCGTGACCATCATCAGGAATCGGATGACCCTGATGCCCAATCAGGCGTTCTACCTGCTGATCAATAACTCGGGCATCGCCAGCATGTCCCTGACCATGGCTCAGCTCTACAAGGACCACAAAGACGAGGACGGCTTCCTGTACATGACGTACGCTTCACAGGAGATGTTTGGACGCCGGTGACGCCGCCGCTCTCGCTCGCTTCACCGGACTGTGACGAAATATTTAAAGTCTTTGTATATAACGTTAGCCTTTTAGATATACTATTCGTTTTCTAATGTATGTTTTAACGGAgtaataaaagtgtttaatttgtGCATCGGTCACTAGAGGGAGACGTCTGTCCGTGTGCTGCAGGAGCCTCCTCAGAAAACTGAATGTTAATCATGTGATAGAAAATAAAggatattgtttgtttgatgcTGCA

Function

GO:

id name namespace
GO:0006914 autophagy biological_process

KEGG:

id description
K10435 MAP1LC; microtubule-associated protein 1 light chain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119535 lncRNA upstream 26359 11571102 ~ 11571431 (+) True G80825
TU119526 lncRNA upstream 38743 11556962 ~ 11559047 (+) True G80819
TU119516 lncRNA upstream 42077 11549615 ~ 11555713 (+) True G80814
TU119509 lncRNA upstream 85896 11511474 ~ 11511894 (+) True G80809
TU119508 lncRNA upstream 88737 11508000 ~ 11509053 (+) True G80808
XR_006252094.1 lncRNA downstream 58188 11657886 ~ 11672957 (+) False LOC122354243
TU119594 lncRNA downstream 83226 11682924 ~ 11683244 (+) True G80860
TU119595 lncRNA downstream 83762 11683460 ~ 11683944 (+) True G80861
TU119599 lncRNA downstream 90742 11690440 ~ 11694453 (+) True G80865
TU119567 lncRNA downstream 136674 11736372 ~ 11766054 (+) False G80847
XM_043252522.1 mRNA upstream 50077 11539678 ~ 11547713 (+) True opn6a
XM_043252731.1 mRNA upstream 62676 11528719 ~ 11535114 (+) True eif4a3
XM_043251321.1 mRNA upstream 70857 11525023 ~ 11526933 (+) False rpl37a
XM_043252192.1 mRNA upstream 74132 11512333 ~ 11523658 (+) True LOC122354143
XM_043252195.1 mRNA upstream 90073 11505653 ~ 11507717 (+) False LOC122354145
XM_043252117.1 mRNA downstream 98626 11698324 ~ 11700214 (+) True tomm20b
XM_043252113.1 mRNA downstream 106410 11706108 ~ 11715351 (+) True tbce
XM_043252115.1 mRNA downstream 106410 11706108 ~ 11715351 (+) False tbce
XM_043252114.1 mRNA downstream 106410 11706108 ~ 11715351 (+) False tbce
XM_043251751.1 mRNA downstream 152847 11752545 ~ 12870121 (+) True LOC122353861
TU119513 other upstream 68154 11528734 ~ 11529636 (+) False eif4a3
TU119512 other upstream 70748 11525059 ~ 11527042 (+) True rpl37a
TU119266 other upstream 90019 11505682 ~ 11507771 (+) False LOC122354145
TU119267 other upstream 90019 11505682 ~ 11507771 (+) True LOC122354145
TU119444 other upstream 371168 11222347 ~ 11226622 (+) True G80761
TU119601 other downstream 98666 11698364 ~ 11700214 (+) False tomm20b
TU120019 other downstream 261244 11860942 ~ 11863112 (+) False LOC122353892
TU120138 other downstream 593056 12192754 ~ 12225492 (+) False G81213
TU120140 other downstream 607057 12206755 ~ 12225492 (+) False G81213
TU120139 other downstream 611254 12210952 ~ 12225492 (+) False G81213

Expression Profile