RNA id: XM_043251548.1


Basic Information

Item Value
RNA id XM_043251548.1
length 673
RNA type mRNA
GC content 0.54
exon number 2
gene id LOC122353677
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 13160142 ~ 13161913 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCGGCTCCGCACCTGATAGGTTTCCGCAGCCTCGGACTAATCGGTCAGAGACGCGGACGTCAGCCATGAGGAACCTTCTGACCACTCAAGACCAGAGCTTCTACCGCGAGCTGATCCTGAAGGAGGCCTACACGCGGCTGGCGTGGAAGACGAAATACGGTAAAGACTACCCGACCGCCTTCGCGTCCCGCAGGTCCGAGTCCATCGGGCCTCCGTCTGTCGGTAAAGTCACGCTGCCTCCGGTGCTCCAGCCGCGGGAGAAGAAGCCGGTGGCCCGCCGCTCGTTGAGTGAAGCCCCGCTCATGAGACCCGTGAGTCCGCGGACCGCAGCCGCTCTTTATCACGGCTTATCCAACGAAGGCAAAGGACGGGGTTTGTATTTGAAGAAACGGGCGCAGAAAGGTCCTGAAGAAAAGTTTGACTATCCGATTCTTTCGTCCTGGGATTATGGATGGAGATTAGGTGATTATGACATTGACTGTAAGACGCCAGCCTATGGGAGATCTGGGATCGTCCGGAGCACTTTCTATGCCAGGAATGGCATTTTTAACATTCCCACAGCCACCGATCAACTCGGATGAGACACCAGTGAAAGTTTTCCTCACCTCATTCTACCGAGTCTCAAGCAAATCTATgatgttaatgaaataaatcGTATGAGCATGCATGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120410 lncRNA upstream 102922 12814058 ~ 13057220 (+) False slmapa
XR_006252067.1 lncRNA upstream 141007 12977589 ~ 13019135 (+) True LOC122353896
TU120458 lncRNA upstream 183987 12965771 ~ 12976155 (+) True G81424
TU120457 lncRNA upstream 187739 12965771 ~ 12972403 (+) False G81424
TU120451 lncRNA upstream 235971 12865979 ~ 12924171 (+) True G81420
TU120499 lncRNA downstream 148408 13310321 ~ 13312912 (+) True G81448
TU120514 lncRNA downstream 152649 13314562 ~ 13315699 (+) True G81454
TU120522 lncRNA downstream 188021 13349934 ~ 13393135 (+) True G81458
TU120551 lncRNA downstream 244765 13406678 ~ 13409257 (+) False G81468
TU120545 lncRNA downstream 245363 13407276 ~ 13408082 (+) False G81468
XM_043251709.1 mRNA upstream 1272 12824930 ~ 13158870 (+) True LOC122353835
XM_043251782.1 mRNA upstream 104266 13034637 ~ 13055876 (+) True LOC122353891
XM_043251732.1 mRNA upstream 204776 12927330 ~ 12955366 (+) True LOC122353848
XM_043251780.1 mRNA upstream 339946 12768207 ~ 12820196 (+) True slmapa
XM_043251770.1 mRNA upstream 422502 12732754 ~ 12737640 (+) True LOC122353879
XM_043252484.1 mRNA downstream 2848 13164761 ~ 13210431 (+) True arid3a
XM_043252485.1 mRNA downstream 3210 13165123 ~ 13210431 (+) False arid3a
XM_043251278.1 mRNA downstream 52395 13214308 ~ 13220680 (+) True ctdspl3
XM_043251266.1 mRNA downstream 59926 13221839 ~ 13226883 (+) True ndufs7
XM_043252048.1 mRNA downstream 71852 13233765 ~ 13251578 (+) False dazap1
TU120442 other upstream 280829 12875513 ~ 12879313 (+) False G81416
TU120439 other upstream 281044 12875513 ~ 12879098 (+) False G81416
TU120440 other upstream 281044 12875513 ~ 12879098 (+) True G81416
TU120409 other upstream 339956 12814058 ~ 12820186 (+) False slmapa
TU120348 other upstream 459258 12700060 ~ 12700884 (+) True G81364
XR_006252101.1 other downstream 2848 13164761 ~ 13210690 (+) False arid3a
TU120480 other downstream 67030 13228943 ~ 13231092 (+) True G81434
TU120540 other downstream 212108 13374021 ~ 13381232 (+) False LOC122354403
TU120541 other downstream 212108 13374021 ~ 13375108 (+) False LOC122354403
TU120552 other downstream 241359 13403272 ~ 13405924 (+) False ranbp3a

Expression Profile