RNA id: XM_043251558.1


Basic Information

Item Value
RNA id XM_043251558.1
length 1075
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC122353685
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 15646561 ~ 15648345 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAAATTAACCATAAACACAACAAACGCCACAgcgcattttttaaatgttataaaacacTCGCAGAAAGTTTGTCCACGGTGTgcggagataaaaaaaaagatgagtttcAACGCGGAAGAGTACTATCGGTCGGTTTTTGACGAGCAGCTCGCCTCGACTATCGAGGATTTGGAGAAAGAGTCGGAGGAAAAGACGAGCTCGATGCTTCTCGCGGAGGACATCGAGGAGAACAGGAGAGCGACCATAGCCCTGGAAGAGCAGGAAAAGGAGTTGCAGGGGAAGCGGGAGCGTTTGCGAGAAAGAGCCGAAAAGGTGTCAAAAGAAAAGGAGGAACTGAGGCAGTTAAAACGGGATACTGCTAAGGAGCTGCAAGAAAATCAGGCCCAAAAGCTGCAAGCCATCCAACATgcaaaggaagaggaagaaaaaatcGAAAAGCTAGAAAAGAGCATTGAAGAACTGACGAAACGGTATGAAGGCCTGCTCGAAGAAAGACAAGAAGAGCACCGGCGTAGACGGCAGGCCAAACTAAACCGGGAGAGCAGTGCAAAGATGCCTGGAAAGtTTGAGGACGCCGATCGACGCCGTGAATGCCGTAGAGCAGAGTACCTGAGAGACGAAAACCTACGACTTAAAGCTGAACTGAAAGAAATCGATCGCTCAAATCTGGAACTGCAGAAGGACATAAAGGAGGAGAAGACTCGTATCCTGCACCTCTCCGAAGAGCTGAGGCAGAAGAAGACAGAGCTGGAAGACATCacagcagaaacagaaagattgAAACTGAAACTAGAGGAAGAGCTCACCACTGAACATGAAGACGAGGTCCTGAACGCTCAGATAAAGGCCGGGATTCGTTCGATGTATCAAATGATCGCACCTTACTGGAAAGAGTCTGAAGCTGTTGAGGACCCCTTCAAGCAGCTGCAGCTGATTCGAAAACAGTTTCAACTTATGAAAGCTTTTGGTGAAGAACAAAAGCAGGTGAAACTAAAGACAACAAGCAGCGGAGATCCAAGCTCTGAAGATGCACTAAAATCAGACAGATGTACCTAAACTACATAATAAAATCA

Function

GO:

id name namespace
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121822 lncRNA downstream 32710 15613146 ~ 15613851 (-) True G82260
TU121823 lncRNA downstream 50153 15596055 ~ 15596408 (-) False LOC122354045
TU121779 lncRNA downstream 93534 15552393 ~ 15553027 (-) False pla2r1
TU121778 lncRNA downstream 93534 15552514 ~ 15553027 (-) False pla2r1
TU121725 lncRNA downstream 148457 15497650 ~ 15498104 (-) True G82214
TU121866 lncRNA upstream 69252 15717597 ~ 15732758 (-) False G82286
TU121874 lncRNA upstream 80444 15728789 ~ 15729815 (-) True G82294
TU121865 lncRNA upstream 82698 15731043 ~ 15732758 (-) True G82286
TU121876 lncRNA upstream 86212 15734557 ~ 15738741 (-) True G82296
TU121897 lncRNA upstream 141200 15789545 ~ 15792089 (-) True G82311
XM_043251650.1 mRNA downstream 15293 15630130 ~ 15631268 (-) True LOC122353771
XM_043252027.1 mRNA downstream 22548 15622922 ~ 15624013 (-) True zgc:193807
XM_043252026.1 mRNA downstream 31624 15595565 ~ 15614937 (-) True LOC122354045
XM_043252025.1 mRNA downstream 31624 15596160 ~ 15614937 (-) False LOC122354045
XM_043252024.1 mRNA downstream 56097 15577606 ~ 15590464 (-) True itgb6
XM_043251292.1 mRNA upstream 127842 15776187 ~ 15781689 (-) True b3gnt5a
XM_043251651.1 mRNA upstream 193816 15842161 ~ 15949590 (-) True LOC122353772
XM_043252242.1 mRNA upstream 783309 16431654 ~ 16472967 (-) False tbl1xr1a
XM_043252241.1 mRNA upstream 783309 16431654 ~ 16472967 (-) False tbl1xr1a
XM_043252240.1 mRNA upstream 783309 16431654 ~ 16472967 (-) True tbl1xr1a
TU121711 other downstream 244870 15400918 ~ 15401691 (-) True LOC122354564
TU121487 other downstream 411505 15234488 ~ 15235056 (-) False LOC122354561
TU121492 other downstream 432503 15204961 ~ 15214058 (-) True G82067
TU121170 other downstream 1110169 14534718 ~ 14536392 (-) True G81866
XR_006252040.1 other downstream 1194821 14442601 ~ 14451740 (-) True chrna4b
TU122317 other upstream 1889158 17537503 ~ 17540171 (-) False G82585
TU122319 other upstream 1890038 17538383 ~ 17540171 (-) True G82585
TU122326 other upstream 1902236 17550581 ~ 17559836 (-) True G82588
TU122328 other upstream 1925257 17573602 ~ 17576984 (-) True G82590
XR_006252134.1 other upstream 1986461 17634806 ~ 17635665 (-) False LOC122354622

Expression Profile