RNA id: XM_043251608.1


Basic Information

Item Value
RNA id XM_043251608.1
length 3009
RNA type mRNA
GC content 0.50
exon number 6
gene id vgll4b
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 911675 ~ 933876 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCCAATAAAGGTTTCCAAGCGTTCCCGCGAAGCGCGTGTTTCTTGGCGCCCTTCCCCTTCACGCCGTACCTGTTGCGCGGATGTGACGTCGCTCCCTCATTAGCATACCGCGCGCCCGTCTCGCCCGGCGGGCCTCGACCAATGAGAGCCCGCGTCTCCCATCACCTGCTAGGAAGAGCATTCCATCATTCCGCGCATTCTTCCCGGCGCTGCGTCTCCGCGGCGAGCTCCGGGTCGCTCTCTGGGGCTTTTCTCCGCGTCTCTCCTCGGGTCCGGCCCAGGATGGAAACGCCTTTGGATGTTTTGTCGAGAGCAGCCTCTTTAGTGCACCAGGATGATGAGAAACGTGAGGCTGCTTTGAGAGGCGAGTCCAGAATGCCGGCCATGTCCCTGTCCTCTGCAGTCAGCAATCACAGGACAGGCCCCCCTCCCATCAGCCCCAGCAAGAGAAAGCACAGCGGGGACCAAGCAGACGACGACATCGACTGTAACAGCGAGCATGTGGCCAAGATGAGCCGGCTGTTTGTCGCACAGTTAGGCAAGCCTGCCAATGGGGACTACCGCAAGGACCCCCGGGATCGCAGCCGCAGCCCCATAGAGCGCATCAGCGCCTCCCCGATGAGTCTGGTTGGTGGTCACCTGTACGCGCACATGCCCAGCCTGGCCATGGACCAGCCTCTCGCACTGACCAAAAACATGGACGCCGCCCGCACTGTCGCCATCTCTCCCACCGCCAGCCCCATCGAGCGCCAGCAGaatCGTCCCTCTGTGATCACATGTGCCCCAGCGAACAACCGAAACTGTAACCTCACCCACTGCACGGTGTCTCACAACGGCTGCTCGCCCGGCCTGACTTCAAGCTACCGCAGACCCTCCAACTCGAACACGGCCTGCGACCCCGTCATCGAGGAGCATTTCCGCCGCAGCCTGGGGAAGAACTACAAGGAGCCCGAGCCCGTGACAAACTCGGTGTCCATCACGGGATCGGTGGACGACCACTTCGCCAAGGCTCTGGGCGAGACGTGGCTGCAGATCAAGGCCAAGGGCAGCTCCTCGGCCAGCCCAGACTCCTCGCCCAACGGCCACATGGTCAACCACAATCACTCCCCTTCCCTCGTGTCTTGAAAAGAGGACCAGCGAACCTTCTTCCAGCCGCTTCACTCTCAAAGCATGCATGTTTAGCAGAGCTGACGTATAGCTATGTACATAAGAACGCAAGACGAGGAGGTGCTCCTTTCACTTTCAGTTGTGCTTTtgattcttcttcttttgtttgTAAGTATGCTAGTATACTTTTAGCTTGGCTGTTGCATTATGGGAAGcccatacttttttttgttgttgttgttgagatAAAGATCAGCCAGACACTATCGAACCATCTGCCTCAGATACCAAAGAAACAGCTGATGCAAACCTTTTACCCAGAAGCCATTCTTCcaccgctctctctctctccgtctttctcttctctctctcccggTTGTGTCCTGAATCTGTACGTGTATACTTGAAACGGAAGGCCTGGACTGATTTTGCactatggatggatggacggatgtcAGCGTAGCGTCGCTGGGATGCTCAGAAGGCGGTGCGGTTCGCAGGAAACCCGTTTCTTTCTCTACGGCGCTGACACGACTGGACTGTGGCAGACGTGGGCATTCTTCTCGTTTCCATGGGTTTTTCCCAGGCACTGTGGTTTTAGTAGAGTAGACTAAAGGTTTAAGGGTAAACTAGTGCTTATaagtgcatgtttttaaaatagctgGTATCTATTATTGCGTAGACATTTCAATCGTAATACTTTTAGCCTTTTCTTCagatttgagtttatttttgtcAGTAACAGTCCTAGATAAACTTACTGCTGGTACAGTTGTACtccatattattattttctattcaaTATTCATTGTGGTAGCTGCCAGATACAGAAGAGAAATCAGCCTCCGGACAGGCCATCTATATATGAACGCTTGGTTGTGTATGTTATTAATCCGTGGTACAGGATGCTGTCGCTTTGcatgactgaaaaaaaagaaaagaaaaagagcctTCGCAGCTACGGACAGGTCAACTGTAGCGTTGACAATCTGCCGGAAATGTCGAGCTagattggtgtgtgtgtgtgcgcgcgtgtgtttgtcgttcatcttcttcttcttctcttaaTTGTGCGCTCGTGGCCTGTACCGAATCAAACATTCCTCCGACAGGGAGCGGAGACGCTTCAGCTCGTCTCACATTCCACCGGCCCTgttcacctcacacacacacacacacacacacgcttcacACTTTCTCACTTCCTGCTCGACACACGTTATCCTACACGCTGTAGGTGAATCActtacttaaaaacaaaaaaggtttttatatagGAAACTATAAGACCATCATTACGCTGTGCGTAACGAATGTACAGAGAAAAATCGTAGGTATTTTTTGAGGaacaattaatttgttaatgATATGTAGCTATTTAATTTTTCCCTTGTCCTTTATTgtaatcatgcttttttttttttttttttggtagaaaAAAAGTtgatcttttttgtttgtaggtTTTGTCTGTTTAAGGTTAAAGTGCAGGAACACAGTTATTCTATGAAAACACTGCGTTAGTGTAACAGCCACTTGTGTATTATTTCTGAAGGCTACTGAGTCTCGACACACTTCTGAACGGAGGCTTTCGACTGTCTCTGGAGACAATTGAACAAACAGACTCGAGTCCCGGCGACTTGCTGAGCTCCAGTACCGTCGCTGGAGATAGAGCTGACAGATTTTCTATTTGATGTGCGCTTCCAGGAGAACGACGACACAAAACCAACAACGTTTAAAACACTTCTCACCTCGAGTGTGCTTCTTAATGATTTGTAAATCTGTATTATACCCTCATTTCATGGCCTTGTTTCTCCTtggaataaaacaaacttttggCAGGCcattgttttgtacttttaagtAGCCTCAATGAACAATAAAGTGCTCTTAAACCACA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115867 lncRNA downstream 4101 905807 ~ 907574 (-) True G78298
TU115715 lncRNA downstream 117539 768141 ~ 794136 (-) False G78195
TU115727 lncRNA downstream 117539 768141 ~ 794136 (-) False G78195
TU115721 lncRNA downstream 135710 599107 ~ 775965 (-) False G78195
TU115717 lncRNA downstream 170375 730397 ~ 741300 (-) True G78195
TU115869 lncRNA upstream 39086 972962 ~ 974700 (-) False LOC122353728
TU115905 lncRNA upstream 87600 1021476 ~ 1023810 (-) True G78324
TU115912 lncRNA upstream 115530 1049406 ~ 1049936 (-) True G78327
TU115920 lncRNA upstream 116202 1050078 ~ 1052544 (-) True G78331
TU115933 lncRNA upstream 138670 1072546 ~ 1073551 (-) False G78338
XM_043251541.1 mRNA downstream 486010 414402 ~ 425665 (-) True mettl1
XM_043251540.1 mRNA downstream 499090 406021 ~ 412585 (-) True LOC122353667
XM_043251542.1 mRNA downstream 506264 402940 ~ 405411 (-) True LOC122353669
XM_043252461.1 mRNA downstream 517489 386034 ~ 394186 (-) True si:ch1073-456m8.1
XM_043251510.1 mRNA downstream 526351 374160 ~ 385324 (-) True avil
XM_043251612.1 mRNA upstream 39078 972954 ~ 974787 (-) True LOC122353728
XM_043251611.1 mRNA upstream 43721 977597 ~ 980116 (-) True LOC122353727
XM_043251610.1 mRNA upstream 51467 985343 ~ 990262 (-) True LOC122353725
XM_043251272.1 mRNA upstream 106491 1040367 ~ 1043419 (-) True mkrn2os.2
XM_043252079.1 mRNA upstream 110203 1044079 ~ 1045956 (-) True mkrn2os.1
TU115720 other downstream 135710 699943 ~ 775965 (-) False G78195
TU115722 other downstream 135710 699943 ~ 775965 (-) False G78195
TU115726 other downstream 135710 699943 ~ 775965 (-) False G78195
TU115685 other downstream 455677 453134 ~ 455998 (-) True G78170
TU115639 other downstream 462774 443885 ~ 448901 (-) False G78144
unassigned_transcript_1475 other upstream 172469 1106345 ~ 1106416 (-) True trnac-gca_5
unassigned_transcript_1476 other upstream 172903 1106779 ~ 1106850 (-) True trnac-gca_6
unassigned_transcript_1477 other upstream 173113 1106989 ~ 1107060 (-) True trnac-gca_7
unassigned_transcript_1478 other upstream 173329 1107205 ~ 1107276 (-) True trnac-gca_8
unassigned_transcript_1479 other upstream 173547 1107423 ~ 1107494 (-) True trnac-gca_9

Expression Profile