RNA id: XM_043251651.1


Basic Information

Item Value
RNA id XM_043251651.1
length 2139
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC122353772
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 15842161 ~ 15949590 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGAGGGAGGGCTGGAGGAGAGGGAGAGGACACACGGCTGCCTACCAATCACACCTTTAGAACGACAAGGCGCCCATCGATCCACACCGTCCTCACACTCCACTGCCAATGGAGAGGTGGGAAGTGGAATTTTGACTGCTATAACGACAGGGGCAACAGGTAGCCTGGCATATAATGAGCCCATTAAATCCCATGAGGCTGAGAATTTGGCGGCAAAAAAAGAGCTGGCTGACATATTGGACGGGACGCGGAAAGACACGAGGAAGAGACACGGAGAGCCGGAGGAGGAACTAAAGCTGAAGAAAATTGTCACTGTTATGAAGAGCTTTGGGTTCGCTGTTGCCATAGATACTCCATGGCCTTTCCACTCGGAGAGTGCTGCTGAATCAACGCATTACTCTGGCACTCCGAGGCAGGTGAACACAGCCCAAAAGAAATCAATGGGGAAGAGAAGCACAGCAAACTCGACTGGAAGCCTGGAGCTCCAGGGACTACAGCAGACAGCTCTCACGGAGCATCCAACGCCTGCCACAGTCCAGGCAAACCATCCCGAGGACAAGGgccaaaacaagagaaaagggaaaaagacAGACAGCGGTGCCCCAAAGAGGAGCAAGAAGAATGACACCCGAAGAAAAGATGGATCGCCGGATGGCTGTGCGGGAGCAAATAATGAACGAAGCCCCCTTCCCGCGCCCCCTCGCATTTCTCTAAGAGACCTGATGGAGGCTGAGACAAAGTTAGTGTTCGGTGACGAACAGGACATTACCCACAAGTCCCTGGCCTCCACCGCCACACAATTAATGTGTCAAGCGGCTGAAATAGGAGGGCCTCCGAGTGGACCTAATCTCAGCTTTCTGCCTCAAATTGACAAATGGCTCGATGTAGCTTTACAGGACGCCAACTCGTACTACCAACAGAAGAAATATGCCACTGCAGCCAGCCGTTTCACTGCTGCACTAGAGCTGTGTTCCAAAGGCTCCGTGTTTGAGAAACCTTTTAATGCTGGTTATGAAGACATCTGTAAAGTTGCCAGCTTTGTTGAGTCCAGAATAGTCTCCTGCTATCTCCGAATGAAAAGGCCTGACCGGGCATTGCTGCATTCCTACAGGAGCATCCAGCTAAACCCCATACGTTTTCAGAACCACCTTCGACAAGCCATGGCGTATCGACTGCTGGGAAACCCCTGCGAGGCAGCGAGGGGCGCCATGATTGCTGACTACATTTACTGGCTGTCAGGAGGCAACAACCGGCACATAAGCAAGCTCATCAAACTGTATTGGCAGGGGCTCCTAGAGGCAGCGCTCACTATGAAGAAGAATTTCTCAGTCATGTTCACTGCCTGGTCTGAAAAACCATCCTCAAACATCATAGAGAAAATAGAGGAGGCCTTCCGGAAGCTTCATCCCGCTTTCACAGACTACATTTTTACTGACCCAAGTGGAGGTCATGTGTTGCCACAGACAACAGACTGGAGTCAACCTTCATCCACACAGAGTTACTTCCTCACCCTAGGCTTCAGAAGGAGAGATGATGGAGACTTCCTACATAAACTGCTCCACGGGAGATGTCCAACATTTACAGGGCAAAGATCTCCATTCACTCCTCCCAGCTATAGAGACCTTGAGATGATGTATGAGATGCAAGGAAAGAAGATCCTGCCCGTTCTAGATTTCATTAAGTGCACTAAGCTAAGTGTGGGATTTTCCCAAGGATCTGTACTCATAGAGCGACTGCAGTATGCTAGTGTCCTAGGACAGCTGAACAGGTTCAGAGAACACACGCATGTACTGCAGTACACGCTAGCTGAGCTAGCGGTCGCACCCTACCTGCAGGACATCAGTCCTTCTGACACAGAGCTGCTGCTGGCTCTAATGGCAGACACCATGGACACCCTTGAAGGCAAGCGGCCTGATCAGGAACGTGTGTGGAATGCAATGCAAAAGGTGATGGCAGTGAAGGAGATGCTTTATCAGCTAGAGGAGGCCTACCTAAAGGAGGCGGTGCTGAGAGCCACCAGAAAGCAAAAGGCTAAAGCGAAGAAAGCCCTGAAAAGCTGTCCCTCAGGAGTCCCCCACACCACCTCAGGGCCGACCGAACGCAGCGGCCGACCCTCAGCCCAGTCATCCAATAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121897 lncRNA downstream 50072 15789545 ~ 15792089 (-) True G82311
TU121895 lncRNA downstream 50072 15790690 ~ 15792089 (-) False G82311
TU121876 lncRNA downstream 103420 15734557 ~ 15738741 (-) True G82296
TU121866 lncRNA downstream 109403 15717597 ~ 15732758 (-) False G82286
TU121865 lncRNA downstream 109403 15731043 ~ 15732758 (-) True G82286
TU121947 lncRNA upstream 181192 16130782 ~ 16131481 (-) True G82347
TU121972 lncRNA upstream 265526 16215116 ~ 16215611 (-) True G82370
TU121974 lncRNA upstream 294111 16243701 ~ 16243954 (-) True G82372
TU121976 lncRNA upstream 333826 16283416 ~ 16283618 (-) True G82374
XR_006252137.1 lncRNA upstream 382554 16332144 ~ 16334070 (-) True LOC122354638
XM_043251292.1 mRNA downstream 60472 15776187 ~ 15781689 (-) True b3gnt5a
XM_043251558.1 mRNA downstream 193816 15646561 ~ 15648345 (-) True LOC122353685
XM_043251650.1 mRNA downstream 210893 15630130 ~ 15631268 (-) True LOC122353771
XM_043252027.1 mRNA downstream 218148 15622922 ~ 15624013 (-) True zgc:193807
XM_043252026.1 mRNA downstream 227224 15595565 ~ 15614937 (-) True LOC122354045
XM_043252242.1 mRNA upstream 482064 16431654 ~ 16472967 (-) False tbl1xr1a
XM_043252241.1 mRNA upstream 482064 16431654 ~ 16472967 (-) False tbl1xr1a
XM_043252240.1 mRNA upstream 482064 16431654 ~ 16472967 (-) True tbl1xr1a
XM_043252937.1 mRNA upstream 604818 16554408 ~ 16555675 (-) True LOC122354663
XM_043251654.1 mRNA upstream 641721 16591311 ~ 16593930 (-) False LOC122353775
TU121711 other downstream 440470 15400918 ~ 15401691 (-) True LOC122354564
TU121487 other downstream 607105 15234488 ~ 15235056 (-) False LOC122354561
TU121492 other downstream 628103 15204961 ~ 15214058 (-) True G82067
TU121170 other downstream 1305769 14534718 ~ 14536392 (-) True G81866
XR_006252040.1 other downstream 1390421 14442601 ~ 14451740 (-) True chrna4b
TU122317 other upstream 1587913 17537503 ~ 17540171 (-) False G82585
TU122319 other upstream 1588793 17538383 ~ 17540171 (-) True G82585
TU122326 other upstream 1600991 17550581 ~ 17559836 (-) True G82588
TU122328 other upstream 1624012 17573602 ~ 17576984 (-) True G82590
XR_006252134.1 other upstream 1685216 17634806 ~ 17635665 (-) False LOC122354622

Expression Profile