RNA id: XM_043251702.1


Basic Information

Item Value
RNA id XM_043251702.1
length 5494
RNA type mRNA
GC content 0.48
exon number 30
gene id LOC122353826
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3058375 ~ 3076439 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCTTTCGCGCCGTAAAGGGTTAATTTTTTTCATCTcggttttatttaataaatcaatcagTCTCCGTGTTGAATGCGTGTCAGTCCTCAGACAGCTCTCAGAGACAGCTGATCAGACACGGACGGGCTTTTACAATGGGCTCCAAGCGACGGAGAGCCACTTCTCCGTCCAGCAGCGTGAGCGGAGGAGACTTTGAAGACAGCCAGACCACATCCATACCTTCAACCAGCAGGAAGAGGAGAAGAACCACAAACATCCCCACTGTTGACCCTATTGCTGTGTGTCACGAGTTGTACAACACTATCAGAGACTATAAGGACGATCAGGGCAGGATGCTGTGTGAACTCTTCATCAGAGCACCAAAGAGAAGGAACCAGCCGGATTACTATGATGTGGTGTCTCAGCCCATTGACATGATGAAAATCCAGCAGAAGCTGAAAATGGAGGAGTATGATGATGTTGAGCAGCTCACAGCTGATTTTCAGCTCTTATTCAACAACGCCAAGACATACTAcaaacCAGAAACTCCGGAATACAGAGCAGCTTCTAAACTCTGGGATCTGTATATTCGCACAAAAAATGAGTTTGTGCAGCGAGGGGACTATGAAGAAGACGATGACGAAGACGACTCACAGGAAAACCCTGGGGGGGCCACAGAAGAGGAGtctATCTCGAGCCTTAAGGAAGTTCTCGGGCAGCTTCTGGATGCTGTGTTGACTTGCACAGAACATGGGCGCACCATTAGTGAACTTTTCCAGAGAATTCCCTCTAAAATGcaatACCCAGATTATTATGCTATTATTAAAGAACCAATAGATCTGAAGACCATTGCACAACGAATACAGaTGGGCTACTATAAAAGTGTAAACCATATGGCTAAAGACATTGACTTGTTagtcaaaaatgctaaaacctACAACGAACCCGGATCGCAAGTATTTAAAGATGCAAACACCATCAAAAAGATTTTTTCGCAGAGAAAACTGGAGCTTGAACATTCTGAACCTATTAAAAGCAGCATCAGGATCAGGAACAGAAGGTTTGGACAGGGAGAGCGACTCTCATCCATCACCACAGCTCTACAGTATGGCTCAGAGAGTGAAGAGGACGCCATATTAACTGGCTCTGTTCATTATGATGAGGGCGAGTCAGAGGCTGAGAGCATCCACTCCAGCATGGACATGAGCAACCCCATCTTCCAGATGTACGAGGCAGTGCGAGGGTGTAGAAACAACCAGGGACAGCTTTTAGCCGAGCCCTTCTTTCAGCTTCCCTCCAGGAAAGACTACCCTGACTACTTCCAGCAAATTAGCCACCCAATCTCCCTCCAGCAGATACGGAGCAAGATGAAGAACAGTGAGTACGAAAGTGTGGAACAGATAGACACAGACCTCAACCTGATGTTTGAGAATGCGAAGCGCTACAACGTTCCCAACTCTCAGATCTACAAACGTGTGATGAAGCTGCAGCATATATTGCAGATGAAAAGGAAAGAACTGACAAGGAGAGATGACGAAGATGGAGATAGCATGCTGTCATCTACACTTTCTGACGGGGGCAGCACCAAGCGCAAAAGCCATAAGAAGAACACAAAGAAGAACCGCTTGAAGGCTCTGTACGCTGCTGTGGCAGAGGCTCGGGAGATGGGCACAGGCCGGAGACTCTGTGACCTGTTTATGGTCAAGCCCTCAAAAAAAGACTACCCAGACTACTACAAGATTATTCTGGAACCAATGGACCTGAGGACCATCGACCACAGCATCCGCTCCGACAGGTACCCCAGCGAAGACGCCATGATGGAGGATATGAAGCTGATGTTTCGTAATGCACGTCACTACAACGAAGAAGGTTCACGGGTTTACAATGATGCCAACATTCTGGAGAAGATGTTAAGAGAAAAAAGAAGGGAACTTGGACCTCCACCAGATGAAGAGGACATCGTCTCACCCAAATTGAAAATTAGAAAGAGTGGCATCTCTCCTAAAAAGTCCAAGTACCTGACTCCTCTGCAGCAGAAACTCAATGAACTCTACGAAGCGGTGAAGAACTACACAGACAAGCGCGGACGGCGTCTCAGCACAATCTTCCTCCGTCTTCCATCCCGCGCTGAGCTTCCAGACTACTATGTGGCCATCAAGAAACCCATAGACATGGAGAAGGTGAAGAGCCACATGCTGGCCAACAAATACCAAGATGTGGATGCTCTGGTGGAAGACTTAGTGTTAATGTTCAACAACGCTTGCACCTACAACGAACCTGAATCATTGATCTACAAAGATGCATTGGTGCTTCACAAAGTGCTTTTGGAGACCAGGAGAGACTTGGAAGGAGGAGACGACGCTCATGTCCCAGATGTTGCGCGGCTCATCCAGGAGCTCATTCGCAATCTTTTTGTCTCAGTTCTTGGTCACCAGGATGATGAGGGACGCTGCTATAGTGACTCACTTGCGGAGATTCCAGCTGTTGATCCTAACAGTCCCGATAAGACTCCACTGAACTTTGAGATTATCCGAGCTAATGTGGATAAGGGCCGTTATAAGAGACTAGATGTGTTCCAGGACCATATGTTTGAAGTTTTGGAGAAAGCCAGACGTCTGCACAGAACTGATTCTGAGATCTTTGAGGACTCTGTGGAGCTCCAGCAGTTCTTCATCCGGATCAGAGATGAATTGTGTAAGAACGGAGAGATTCTGCTTTCGCCTGCCCTCAGCTACACCACTAAACACCTGCACAGCGACgtggagaaagagaagaaagagaagctGCCTAAAGAATATGAAGAAGACAAACtcaagagagaggaagagaagaaagAGGCTGAGAAGAGCGAGGACACAGCAGGGGGTGGATGGCAGGGAGCTCTACAACGCAACTACAGCCAGGACTGCAGCTTCAAGGACAACATGTACCACGTGGGAGACTATGTTTATGTAGAGCCCACAGAACCAAACCTGCAGCCACACATCGTCTGCATAGAGCGTCTCTGGCAGGATGATGCAGGAGAAAACTGGCTTTATGGCTGCTGGTTCTATAGACCCAACGAAACATTTCATCTCGCTACACGCAAATTCCTTGAGAAAGAAGTTTTCAAAAGTGACTATTACAACAAAATTCCTGTCAGTAAAATAATGGGCAAATGCGTCGTCATGTTTGTGAAGGAGTATTTCAAGCTACAGCCTGAAAGCTTCAGACctgaagatgtttttgtttgtgagtCTCGTTATTCTGCGAAAACCAAGTCCTTCAAAAAGATCAAAATGTGGACGATGCCGCTGAGCTCAGTGAAGTTCGTCCCTCGTGAAGTGCCATTGCCTGTGGTTCGTGTGGCCTCCATGTTTGCACCCAAACAGGACAGCGAGAAGCCTCCTGAGGTGGCAGAGGATGGCAAAGCTGTGCCATTGATTATTGATAAGGAGAGAGAGGATGCCACTATGGAGGTCAGTAATGGAGAGCCAGGTTGCCAGTACTATGAGCAGCTCTGCTACAATGACATGTGGTTAAAAGTGGGAGACTGTGTCTATATCCGCTCTCATGGGCTTGTACGCAACCGCGTGGGCAGGATAGAGAAGATGTGGGTGCGAGATGAAGCTGCATACTTTTTTGGCCCCATTTTCATCCATCCCGAGGAGACTGAGCATGAACCTACTAAGATGTTCTACAAGAAGGAAGTGTTCCTCAGTAACCTGGAAGAAACCTGCCCTATGACCTGTATTGGAGggaaGTGTACAGTGTCTTCTTTCAAGGATTTCCTGTCATGCCGGCCAACTGAAATGCCGGAAGAGAATGTGTTGCTGTGTGAGAGCCGCTACATCGAGAGCGAGAAGCAAATGAAGAAGTTTAAAGGGCTGAAGcgtttctctctgtctgccaAAGTAGTTGAGGATGAAATCTATTACTTCCGAAAGCTCATAGTGCCTCAGAAGGAGCCGTCTCCACTGCTGGATAAGAAGATCGAGGAGTTGGAGGCCAAGTTTGCAGATATGACGGATGAAGAGCTGGAGGATTTGGGTGATGATGATGGAGATGGCTCTGATGCTCACTGTATGCGACAGCTTCAGACTCAGCTGACCAGCGACATGGACATGCTGCATTATGCCCCTCCACAGTCCACACCCAAGTCAATTAAGGGTCTGTCAAAGAAGGAGGGGGCGAAGAGAAAGATCAACATGAGTGGCTACATCCTCTTCAGCAGTGAAATGAGAGCTGTCATCAAGGCCCAGCACCCTGACTTCTCCTTTGGAGAACTCAGTCGACTCGTAGGCACAGAGTGGAGGAACCTTGAAGCCACTAAGAAAGCCGAGTACGAAGAGCGAGCAGCAAAGGTAGCGGAGCAtcaggagcgagagagagcagCACATCAGAACTCCCCAAGAGCAGGTACCCCAGTAGGGGCGCTTATGGGGGTAGTACCTCCCCCGACCCCCATGGGGATGCTTAGCCACAGCATGACGCCTATGGCAGGCATGATGGGTAGTTACAGGCCACCCATGCAGCCCTTTCAGGGGTCTGTCAATGGCATGATTAACTTGGCCGGCATGCCTCCGCATCCCATGAGGCTGCCTACCTTACCCGTCTACTCCCCGTGGGGTATGCCTAGCATGCCATATCTGGGTATGAATGGAATGGCCCCAGGTTCTACAGGAAGCACTTATGGGACTCAGATGGGTGTGATGAATTCGGGCCAGCAGGCCCCTCCACCCTACCCGGGGCAGGGCCAGGTTGGGCAGCCCGCTCTGCAGCAGCCCTCCACCCCTATATTTGTGGCTCCTCCGCCCAAACCACAGCGACTGCTCCATTCTGAGGCTTACCTGAGATACATAGAAGGACTCAGCGCTGAGTCCAATACTGTCAGCAAATGGGACCAAACGCTCTCCGCTCGCAGAAAAGACGTGCGGCTCACAAAAGAGCAGGAGAGCCGTCTGCCCTCTCATTGGCTGAAGAGTAAGGGCGCTCACAAGACCATGGCCGACGCTCTGTGGCGACTACGGGACCTAATGCTACGAGACACGCTAAACATTCAACAGACGTATAACATCCAAAACCTCTGAAgcgctcctcctcattctcacCCGGCAAGATGAGCTGTTCGTAGTGTTTTAATGTTGTGATCAAATGAAGTTCAGTTTAGGGGTTTGTAATGCTAAATATTGTCTGTTGGCTTTGTTAGTGTCGATGTTTCTTGATAGCACTTTCAATTGGCTGATTTTGTATGTTGGCTATTAAATGTTCTTAGaccaatttaaacattttcataaaatgttgaACTTTAAAAGTGTTGACCTTAATATTTGTGCATTGTACTCTGTGAAGGGTTGAGTTATGATTGTTGTGAGAGAGTGGCCATTTTGGGGTCTTGGTTCAGAAAACGGTATACAACGAAAAGTTAATACGCCTATTTTTCATATCATCCTAGTTGTATTAGCTAAGACATTTTGGAATGGACATCCACTGTCTATTGTTTCAATAAACAAACAGGATATCACTGTTTTCGTA

Function

GO: NA

KEGG:

id description
K11757 PBRM1, PB1; protein polybromo-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116630 lncRNA upstream 55384 3001119 ~ 3002991 (+) True G78797
TU116609 lncRNA upstream 245093 2812377 ~ 2813282 (+) True G78784
TU116594 lncRNA upstream 357672 2700395 ~ 2700703 (+) True G78772
TU116577 lncRNA upstream 569822 2488214 ~ 2488553 (+) True G78757
TU116442 lncRNA upstream 1119289 1936860 ~ 1939086 (+) True G78674
TU116652 lncRNA downstream 38986 3115425 ~ 3116430 (+) True G78815
TU116746 lncRNA downstream 211762 3288201 ~ 3291400 (+) True G78886
TU116758 lncRNA downstream 309842 3386281 ~ 3391193 (+) False tmem167b
TU116759 lncRNA downstream 315125 3391564 ~ 3391790 (+) True G78898
TU116921 lncRNA downstream 463549 3539988 ~ 3541069 (+) True G79002
XM_043251706.1 mRNA upstream 6299 3048774 ~ 3052076 (+) True glt8d1
XM_043251703.1 mRNA upstream 11695 3038429 ~ 3046680 (+) True nek4
XM_043251704.1 mRNA upstream 11695 3038429 ~ 3046680 (+) False nek4
XM_043252544.1 mRNA upstream 252788 2800056 ~ 2805587 (+) True LOC122354390
XM_043251559.1 mRNA upstream 365336 2682706 ~ 2693039 (+) True ccdc3b
XM_043252456.1 mRNA downstream 942 3077381 ~ 3084101 (+) True rpn1
XM_043252589.1 mRNA downstream 23279 3099718 ~ 3114020 (+) True gata2a
XM_043252590.1 mRNA downstream 27710 3104149 ~ 3114020 (+) False gata2a
XM_043252588.1 mRNA downstream 27710 3104149 ~ 3114020 (+) False gata2a
XM_043252591.1 mRNA downstream 27710 3104149 ~ 3114020 (+) False gata2a
TU116622 other upstream 231581 2825539 ~ 2826794 (+) True G78790
TU116585 other upstream 378233 2678135 ~ 2680142 (+) True G78763
XR_006252148.1 other upstream 1180248 1878021 ~ 1878127 (+) True LOC122354697
unassigned_transcript_1620 other upstream 1181461 1876831 ~ 1876914 (+) True trnas-gcu_27
unassigned_transcript_1619 other upstream 1181686 1876619 ~ 1876689 (+) True trnap-agg_19
TU116720 other downstream 193760 3270199 ~ 3272619 (+) False camk2n1
TU116721 other downstream 194244 3270683 ~ 3272619 (+) True camk2n1
TU116739 other downstream 281820 3358259 ~ 3361290 (+) True LOC122353713
XR_006252154.1 other downstream 670211 3746650 ~ 3746742 (+) True LOC122354703
XR_006252155.1 other downstream 670488 3746927 ~ 3747012 (+) True LOC122354704

Expression Profile