RNA id: XM_043251716.1


Basic Information

Item Value
RNA id XM_043251716.1
length 6227
RNA type mRNA
GC content 0.56
exon number 42
gene id LOC122353838
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11893348 ~ 11955071 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCCGGCGCATGCGCAGTGCCGTCGTCATGTTTGAAGCCGCACGATGGGCGGAGATCGTTGCTGTTtccttccaaaaaaataaaaataaaaaatcaactGATGATCTACCCACGGGAAACGGCTCCCGTGCAGCGGCTTTAGAGCGACACGCCAGGACCTGAAGCGATGGATTGGCCGTTTGACAAGACGCATTTACTCCGGCGACGTCGGATCTGTCCGTTATAATCCCGCGGCCACGCCTCTGCCTCCAGATTGAGAAGATCCAGAACTTACGGGCTGCGTCTTTTATGTGTTGAGTCGCGGTCCGTCTCGATCACGTCATGGAGCCCAGCATGGAGTACATAGTGGCCCAGGTCACGCAGAAGGAGGTCGGGCGACGGTTTCAAGTGGGCCCGGAAATCATAGACTACATCCTGGACAGACAGAAGTCACGTGACCTGGAGCACGATCAGAGCATGCTGGACAGGATGGTGGACGCTCTGGCAACCTCGTGGGTCAACGCCAGCAATTTCAAGGTGGCGCTGCTGGGAATGGACATAGTATCTGCTTTAGTGACCAGACTACAGGAACGCTTCAAAACACAGATAGGAACAGTCCTGCCCAGTTTAATGGATCGTTTGGGCGATTCCAAGGATCAGGTTCGAGATCAAGCGCAGTCACTTCTGTTAAAAGTCATGGACCAAGCGGCCGATCCTCAGTACGTTTGGGACCGAATGCTGTCCGGCTTCAGACATAAAAACAGCCGGACCAGAGAAGCTGTTTGCTTTTGCCTTATTTCCACCCTTAACGTGTACGGCGCTCCCGGTTTAACCCTGAGTAAGATCGTCCCTCACATCTGTCACCTGTTAGGAGACCCGGCGGCTCAGGTTCGTGACGGAGCCATGGCTTGTCTGGTGGAGATCTACAGACACGTCGGGGAGAGAGTGAGGCTGGATCTGGGGAAGAAGGGCCTGCCGCAGTCACGGTTGAATGTGATCTTCAGCAGGTTCGATGAGGTCCAGAGGTCTGGGAACATGATCCTGTCCTCAGATAAGAACATGGACGATGATGAATCGGTGGATGGCGGTCGTTCTTCGTCTTCTTCTAAAGGAGCGTCGTCGGTGAGAAGGACAGGGTCCATGCGAAGACCCAGCTCCGCGTCCAGCTCCAAGAGCTCAGGTAAGGAGAGCTCTGGTGCTGGTGCTGTTGATGAAGAAGACTTCCTCCGTGCCTTTGAAGATGTGCCCGCTGTACAGATTTATTCGAGTCGAGAGCTCGAGGACTCCATGAACAAGATCCGAGACATTCTGTCCGATGACAAACACGACTGGGAGCTGCGCGTGGCTGCTCTGAAGAAGGTGCGTTCTCTTCTGTTGGCCGGCGCGAGCGACTACGACGGTTTTCCGCAGCAGTTACGTCAGCTGGAGGGACCGTTCAAGCTCTCGGCTAAAGATCTGCGCTCGCAGGTGGTGCGCGAGGCCTGCATCACGCTCGGACACTTGTCGTCTGTGCTGGGTAATAAATTCGATCACGGAGCCGAGAACATCATGCCAGCGTTACTGAACCTCGTCCCCAACAGCGCTAAAGTTATGGCCACCTCCGGAGTGGCGGCGATCCGTCTCATTATACGGCACACACACTATCATCGTCTCATTCCCATCATGACCAGCAACTGCACGTCGAAATCAGTGGCCGTCAGGcgACGCTGTTATGAGTTTCTCGATCTTCTGCTTCAGGAGTGGCAGACCAGTTCTCTGGAGAGGCACGTCGCCGTCCTCATGGAAACCGTTAAGAAAGGAGTTCACGATGCCGACTCCGAGGCCAGATCGGTCGCCAGGAAATGTTACTGGGGCTTCCACGCCCACTTCAGTAAGGAGGCGGAGCTTCTGTTCCAGGCTCTGGAGCTGACCTATCAGAAGGCTCTGCAGTCTCACCTGAAGAGCTCCGACAGCGTCCTGTCTCTTCCTCAGTCCGACCGCTCGTCCTCCAGCTCACAGGAGAGCCTGAATCGACCGCTGTCTGCTAAAACACCCGTCGGGAGCGGCTCGGGCAAAACTAAAGTGGTGAGTGGTCGCGCGTCCTCTTCGTCCGGCTCTCTCCAGCGCTCACGCAGCGACGTGGACGTCAACGCCGCGGTCAGCGCCAAATCCCGAATGCCGGCTGTGGCCTCTAGCGCCCCCTTCAGCTCAGCCGCGGCACTGCCGCCCGGATCCTACGCCTCTCTCGGTCGCGTGCGAACGAGACGACAGAGTTCAGAGACTACGGCCGGGGGCGGGGCCTCTGTGACGGACAGCAGGGGGCGGAGCCGAGCCAAGGCTGTGTCCCAATCACAACCGGGCAGCCGCTCCAGTTCTCCCGGGAAGCTCTTGGCCCGCTCTTCCGTGAGGATCCCTCGATCAGCCGGATCGTCCGGAGCGCCGTCCGACAAGCGCAGCAAGATCCCTCGCAGTCAGGGCTGCAGCCGAGAGACGAGCCCCAGCCGCGCGAGAGACGtgcggGCCAGTCGTATCCCGCGGCCCAGCATGAGTCAGGGCTGTAGTCGTGACACGAGTCGGGAGAGCAGCAGAGACACCAGCCCGGCTCGAGGGTTCAGTCCTCTGGCATCCCACAGACACTCTCGCTCCACCAGCGCTCTGACGGCCGGAGACGTCCTGCAGACAGACCGCTTCGGACTCATCCATCAGGCCATGCGGATCTTGAACACGGGCACGGAGGTGGAGGCGGCCGTGGCAGACGCTCTGCTTTTAGGAGACTCCAGGAATAAGCGGCGGCCGATGCGGCGGCGTTACGAATCACCCGGCGTGTACTCGGATGACGACGCTAACAGCGACGCGTCCAGCGCCTGCTCGGAGCGCTCCTTCAGCTCTCGAAACGGCGCCGGGCCGCATTACCTGCGTCAGACGGAGGACGTGGCCGAGATCCTGAACCACTGCGCCAGCTCCAACTGGTCCGAGAGGAAAGAGGGGCTGCTGGGACTCCAGAACCTGCTGAAGAGCCCCAGAGTGCTCAGtcgTGTGGAGCTGAAGAGACTGTGTGAGATCTTCACCCGAATGTTTGCAGATCCTCACAGCAAGAGAGTGTTCAGCATGTTCCTGGAGACGCTGGTGGACTTCATCACGCTGCACCGAGACGATCTTCAGGACTGGCTCTTCATCCTGCTCACGCAGCTGCTCAAGAAACTGGGGGCCGACCTCCTGGGCTCCGTTCAGGCCAAAGTCCAGCGGGCCCTCGACGTCACCAGGGACTCTTTTCCGTACGACCAGCAGTTCAACATCCTGATGCGGTTTATCGTGGATCAGACCCAGACCCCGAACCTCAAGgtgAAGGTGGCCATCCTGAAGTACATCGAGTCCTTGTCGAGGCAGATGGACCCGTCGGACTTCGTGAACTCGAGCGAGACGCGGTTAGCCGTATCCCGGATCATCACGTGGACCACGGAGCCCAAGAGCTCGGACGTCAGGAAGGCTGCTCAGATGGTTCTGATCGCCCTGTTTGAGCTGAACACCCCAGAGTTCACCATGCTGTTAGGAGCCCTGCCCAAAACCTTCCAGGACGGAGCCACTAAACTCCTGCACAACCATCTGAAGAACAGCAGTAACGCAGCAGCAGTGTCCCAGGCGTCTCCCAGCGGCGCGGGACGGACCCCTCCGCGGCCCCCAGGGACCCGCAGCAGCCCGCTGACCTCACCCACCAACGGCTCTCACGGGGGACTGTCACCCAGTCGTTTGTGGGGCCGGAGCTCAAAGCCTTCTTCTAACCTCCCTCCTCCCTACCCCGGCCCTGCCACCCCCCCTCTCCGGGCCTATCGGAGGGCGTATTCGCCCAGcatgCTGGAGTACGACACAGAGAACATGAACTCAGAGGAGATCTTCAGCTCGCTGAGAGGAGTTACCGAAGCCATCCAGAGCTTCAGTTTCCGCAGTCAGGAAGACATACTCGATCCCATCAAGCGTGACGGCAAGAGGGACGATACAACCGGTCTGGCGTCGTCCAGTGCAGATCCTCGTCTGACCGCTGCTGTGATCGAAGGAGGCCGGCCGGCGCTGGACAACAAGACGTCGCTGTTAAACACGCCGTCCCCTCGAACGTTCAGCGGCCCGTGGGCTCGAGAATACAACCCGTACAACTACAGCGAGTCCATCAGCGCCTACGAGAAAGGAGCCGTGTTCGACGACGCGGAGCACATCCGAGACGCTCGTCCTCAGGACTGCGGAGAAAACAAGATCCTGCATCCCAAAGGTTTTTCTGCAGGACCCGGGCAGCACCTGGAGATGGTCGGTGACCTGCTGAAGGAGCTGTCCAATCACAGCGAGCGCGTGGACGAGAGGCGGGCCGCTCTCCTGGAGCTGTTAAAGGTCACGCGTGACGACAGCCTGGCCGTCTGGGAGGAGCATTTCAAAaccatgctgctgctgctgctggagacGCTCGGAGACAGAGACCACACCGTCCGAGCGCTGGCCCTGAGAGTCCTCAAGGAGATCATGCGCAGTCAGCCGGCGCGCTTCAAGAACTACGCAGAGCTCACCATCATGAAAACCCTGGAGGCCCATAAAGACTGTCACAAGGAGGTGGTGCGGGCAGCAGAGGAGACGGCCTCCACGCTCGCCGGGTCCATCCACTCAGAGCAGTGCATCAAGGTGCTGTGTCCCATCGTCCAGACGGCAGACTATCCCATCAACCTCGCCGCCATTAAGATGCAGACCAAAGTAATCGAGCGCATTCCCCAGGATTCCCTGATTCAGCTCCTGCCTGACATTATCCCCGGACTCttacagggtTATGATAACACAGAGAGCAGCGTACGCAAGGccagtgtgttttgtttggtgGCCATTTACTCGGTGATCGGTGAAGATCTGAAGCCTCATCTCCAGCAGCTGACCGGCAGCAAGATGAAGCTGCTGAACCTGTACATCAAGCGAGCTCAAACCACCAccaacagcaacagcagcagctctTCGGACGTCTCGTCTCACAGCTGAAGATCCGGCACATTAGCGAGTAGATCTCTAGCTTCACGTGCGCGTTCGCTTCATTAACTCCACGTGGTTCATTGAACAGGTGCAGAcactaaagtgtgtgtgtgtgtgtgtgcgcagcaGTCGTGCCTCTGTGTGTAAGACAAACCGTTTTTATCGCTCTTTTACCGTTGCCATGACGATTACCGTCCTCATATTCAAAGCACACGTAACGTTCTTTCCGATCGGCCAATCAGGAGTCGTCTTACCTCTCTCTAGTGAATGTAACGCCCGTTTTTACGTCGTTAACGCTGCTGCCTAAACTTCTCTAGGACGCCCTTTTAGTGCCGACGTTCATTTTTTGGGCATTTAAGAATATGCAAGAACCGAGATTGTATTTGTACAGTATTCGTTTTGTTCCCGGCCGACAGACGGAGAGCTCTCGACCGTAAGAACGAGGGATACACCGCTAACATGGAGCTTTAGAATAAACGTGATTTAAGGACCGCAAAATATACAATTTGGTAATCTGAGGTATAGATAATCCGATGAATCTTCCTCAGACGCGACAAAGCCGAATCCCTAAAGACTCGCTCGCACGCACACAATGCGTTTAATGCAAAGCAGAAGCTTTTTAGCACCAAAAACAATCCAGTTTGGATTCTTACTAGTTAACCCGGCCGTGGTGGTTTAGTCGTTTTCTACCTGGTTTTAAATCTTGGTGCTTGAATGAATCGCCCCGTGCTTCTTCTGGACGTTTACCTTCGGTTTTTCCTTTCTCCGCTTTGATTTTAAAAGCCTTCCGGCGGCCTCTGGAAAGAAAGTCACACTATTCAGTCTCGTCAGAGGTCCCAAAGAACACCGCGCGCTAAAAATGCGTAAAATCCTTCTAGCAGTGGCTTATTTGGATTAAGCAaagataatatattttaaaggtgatttcTGGACTCTGCATGCAGGCAATCGATTCGGTCTTTCACCACACAAGCGGTTCACCTCGTTATACGTGAAGCTAAGAGAATCAAATCTGATATTTGTAAATACTTTATAGTGCACTGCTTGAATCTTTAAGTCCGTTTGACCAGAGCGACCCGGAGCGTTGAGTAAAGCCCTGATTGATTAACTGAAGGGAGATGCATTGGCGCTTTTTTAGATCGAGACGTAGAGCTTCACACGCTGCGCATGCTTCTGTTTATTATCCacgtctgtatttatttgacacCGCGGCTGTATATACGCTCACCTGTGTAGGATTTTCTCTAGATAAAGCAAACCCGAGTTTTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120014 lncRNA upstream 36029 11851045 ~ 11857319 (+) False shroom2b
TU119632 lncRNA upstream 78617 11773618 ~ 11814731 (+) True G80887
TU119635 lncRNA upstream 118226 11774726 ~ 11775122 (+) True G80889
TU119564 lncRNA upstream 128408 11761639 ~ 11764940 (+) True LOC122353893
TU120141 lncRNA downstream 250097 12205168 ~ 12225492 (+) True G81213
TU120168 lncRNA downstream 280121 12235192 ~ 12236177 (+) True G81234
TU120167 lncRNA downstream 280517 12235588 ~ 12236177 (+) False G81234
TU120170 lncRNA downstream 282747 12237818 ~ 12238356 (+) True G81236
TU120172 lncRNA downstream 283399 12238470 ~ 12238784 (+) False G81238
XM_043251730.1 mRNA upstream 9918 11870425 ~ 11883430 (+) True clcn4
XM_043251783.1 mRNA upstream 24825 11860659 ~ 11868523 (+) True LOC122353892
XM_043251723.1 mRNA upstream 40895 11827878 ~ 11852453 (+) True shroom2b
XM_043251727.1 mRNA upstream 40895 11827878 ~ 11852453 (+) False shroom2b
XM_043251726.1 mRNA upstream 40896 11827878 ~ 11852452 (+) False shroom2b
XM_043251766.1 mRNA downstream 207007 12162078 ~ 12166342 (+) False LOC122353874
XM_043251765.1 mRNA downstream 207018 12162089 ~ 12166342 (+) True LOC122353874
XM_043251777.1 mRNA downstream 392584 12347655 ~ 12364409 (+) False acyp2
XM_043251776.1 mRNA downstream 400257 12355328 ~ 12364409 (+) True acyp2
XM_043251710.1 mRNA downstream 420042 12375113 ~ 12466443 (+) True sptbn1
TU120019 other upstream 30236 11860942 ~ 11863112 (+) False LOC122353892
TU119601 other upstream 193134 11698364 ~ 11700214 (+) False tomm20b
TU119538 other upstream 220410 11580026 ~ 11672938 (+) False LOC122354243
TU119539 other upstream 232406 11580026 ~ 11660942 (+) True LOC122354243
TU119513 other upstream 363712 11528734 ~ 11529636 (+) False eif4a3
TU120138 other downstream 237683 12192754 ~ 12225492 (+) False G81213
TU120140 other downstream 251684 12206755 ~ 12225492 (+) False G81213
TU120139 other downstream 255881 12210952 ~ 12225492 (+) False G81213
TU120226 other downstream 627844 12582915 ~ 12585641 (+) True G81268
TU120348 other downstream 744989 12700060 ~ 12700884 (+) True G81364

Expression Profile