RNA id: XM_043251728.1


Basic Information

Item Value
RNA id XM_043251728.1
length 5390
RNA type mRNA
GC content 0.54
exon number 14
gene id gli2b
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11982436 ~ 12059316 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agagagagagagagagagagagagagagagagacagagagagagagagagagcattgaAAACAGATCACCGGGGGTCTCACCGCAAACAGTCGCTCTCTCAAACTCTTCTGTTGTTTTCGTTCCCCTCAACTTCTCCGATGCACGCGCAGACGAAAGCTCCGCTCGGTGATGGACCGTAAAAGTTAGGAGAAGAGCCCGAGGCTGTCCGCTGAAGTTTCCGCGCCGCTCCTCGCCCGGCTCTGGATGGACGTTCGCGGGACGCGCTTCTGTTTTCTGGAGCCGGAAAGTTGAAGAAAGAGTTCGCCCGCGTCGCGCGCCTGGAGTTCGGAGCTCGGAGTCAACTCTTCGGAGCCGATATCTCGTCAGGATGGAGGCCGGCGACAAGAAGGACTGCAAGACGTCTCTGGATGGAAACAGCTTCGGAGAGCTGCCCAAAAAGCCTTCCCCGTCATCCCTGGCCAGAGGCCCTCATCACATCTTCCCGACTTTCCACTCTCCGATCCCCATCGACGTGCGTCATCACGAGGGGAGATACCACTACGAGCCCCACGCGCTCCACGCTTTGCACGGTCCTGCAGGTCTGGCGGGTGGGCCGGTGATCTCGGACATCTCTCTGATCCGTCTGTCTCCGGGAGCGTCCGGCGAGCCCAGCTTTCTCCCGCCGCACTCGTACGTCTCTCCTCACGTGGAGCACTACCTTCGCTCGGCTCACAGCAGCCCAACGCTGTCCATGATCTCCGCAGCTCGGGGACTGAGTCCAGCCGACGTGGCTCACGAGCACCTGAAGGAGCGAGGTTTGTTCGGTTTGCCCCCTCCTCCTCCCGGCGCGACCCCGGCCGATTATTACCACCTGATGGCGGCCCACAGAAACCCGTACGGAGAGCTGCTGATGCAGGGGCCCGGAGCCGCCGCTCACCTGCCCGAATACTTCACTCCGGTGGACGTGTCGCGGTTCCCCAGCCCTCGCCTGACGCCGCGCTTGAGCCGGAAGCGAGCTCTGTCCATCTCTCCGCTCTCGGACGCCAGCATCGACCTGCAGACTATGATCAGAACCTCACCCAACTCTCTGGTGGCGTACATCAACAACTCTCGCTCCAGCTCGGCCGCCAGCAGCTCGTACGGACACCTGTCCGTCGGAGGCATCAGTCCGTCGTTCCCGTTCCCTCACTCCATCAACCCGGTGGCGTACCAGCAGCTGTTGAGCCAGCAGCGAGGCCTGAGTGCGTTCGGACACGCTCCTCCGCTGCTCCAGCCGTCACCCAGCTTCTCCAGCAGACACCCGCTGAGCCTCTCCAGCCTGCAGACGCCCGCCGCCGCCGCCGACCCCGACACCAAGAACTCAAACGGAGACTCTGCGGTCAGCAGCACAGTAAACCCCCTGAGCAGcaagaggtcaaaggtcaagacAGAGCTGGACGGGCCTCGACCTGTGTCACCTTGCTCTCCGGAGCATCTGGGCGGCGCGGCGGACCTGAAGGAAGACTTGGACGACTGCAAGCAGGAAGCTGAGGTGGTGTACGAGACCAACTGCCACTGGGAGGCCTGCAGCAAAGAGTACGACACGCAGGAACAGCTGGtgcatCACATCAATAACGAACACATCCACGGGGAGAAGAAGGAGTTCGTGTGCCGCTGGGAGGAGTGTTCACGCGAGCAGAAGCCCTTTAAAGCGCAGTACATGCTGGTGGTTCATATGCGCAGACACACCGGGGAGAAACCGCACAAGTGCACTttcgAGGGCTGCTCTAAGGCATACTCGCGTCTGGAGAACCTGAAAACACACCTGCGCTcacacaccggagagaaaccctaTGTGTGTGAACACGAGGGCTGCAACAAGGCCTTCTCCAACGCCTCGGACCGAGCCAAACACCAGAACCGCACACACTCCAACGAGAAACCCTACGTGTGTAAGATCCCGGGCTGCACGAAGCGCTACACCGATCCCAGCTCGCTCCGGAAACACGTCAAAACGGTCCACGGCCCCGATGCTCACGTCACCAAGAAACAACGAGGCGACCTGCCGTCCCGACCTCATCCGCCCAAGGAGAATGGAGAGAACGAAGCGGGAACCAAGCTTTCGGTCCGAGCGGCGGAGGACAAACTCGAAGCCAATAGCACAACTAGAGGGGTCGAGGACTATCTGCAGGTCAAGTCCATAAAAACGGAGAACTCTATGATGTATCAGTCCAGCCCTGGTGGTCAGTCATCATGTAGCAGCGAGCCGTCACCACTTGGCAGTGCCTCCCACCATGACGGTGGAGTAGAGCCGACGGGACTCAGCGGGGGCAGCATGGGAGATCTGAGCGCCCTGGACGACGCGCCCCTCATGGATTCCACCGTCTCCACAGGGATGTTGGGCCTCCATCTTCGAAAGAGCGCTAGCCCTGCTTACAGACTCACACACCTGAAGCAGGAAAGGCTGAAGTCAGTGAGGGACTCGTGCTCCTGGGCAAACCCAACTCCTTCTGCCCCCAGCACCAAGCTTCCACCCATCAATACCGGTTCTTTTTTGGAAGGTTCTGGTGGTCTGTGTGATCCAGGGCTTTCCATCTCCAGTCCACGCTTGGGCGACCTTTGTCCTGGAGAGACTACGGTTCTGAGTCAGCTGGTGGAGCGCCGTGACAGCCTAGCCAGCACCGTGAGCTCGGCTTACACCCTCAGTCGTCGTTCATCTGGAATCTCGCCTTGCTATTCCAGCCGCCGGTCCAGCCAAACCTCTCAACCTGGTGGCCGTCTTAACAACATCAGCTCGGCCGACTCCTATGACCCCATTTCCACCGATTTGTCAAGAAGGTCCAGCGAGGCCAGCCAATGTGGAGGACTCCCCAGTCTACTCAGTCTGACTCCTGCCCAACACTACAGACTCAAAGCCAAGTATGCTGCTGCCACAGGAGGTGCTCCTCCCACCCCTCTTCCTAATATGGACTGCATGAGCCTGCGGACTCGGATGGCCCTGTTAGGGGATTCCCATGAAATGGCCACACTCCCTATCCAGCCTCCTTCGGTTCCCAGAAGGTGTAGTGACACCAGCTATGCTCACCGTAGCATATTGCCCCATGAggtgacgggaaacatcactcGAAGAGCAAGCGACCCAGTTAGAAGAGTAGGCACAGAGCAGCATTCCCTCCAGCAACGTTACAACAGCATGTCCAGTGTGAACCCCTATCAGTCATTACACCTTCCTGCACCTAGTCGTCACTTTTCACAAATCAACAGCCAGTCCGAGGGTAATGTAAACCGCCACCCATATCCACCCCGACCTCCTAGCATTTCTGAGAATGTGGCAATGGAAACCATGGCCAGTGACATGGACAATCAAAACAATGGTCTTGATGATGCAGTGATGTTGCCTGATGATGTCGTTCAGTACCTTACATCTCAAAATGGAGAATCTGCCCAACATGCTGCGACAGCGTACCGCCATCACCCTGGACAGAGCATTCACAGCTTTGGCTCTCCGCAGCAATCCCGTTACCAGAGACGCCTAGCCTTGGTGGAGTGCAACATGAATGCCGCAACGCGACAATCTGCAGCTCCAAGCTCCCAGCAGACATTTCCAGGTTCCCCCAGTGACACTAAGAGCCAGATGCCAGTGCAGTGGAATGAGGTCAGTTCAGGGACAGTGGATTCATCTCTTGGCCAAACCAAGCAAGGATCAGGGCGGGGAAACCTCACTGCActccaacaaaaacaaaacctcagCCCCTTTCAGAACATCAATTCCAACCAACAAGTTGGGCTGATGAGTCACAACCTCGCTCACGCTGCCCAGCAGAGTCACGTGCAACGTAATAGCGAATCTAATTCGCAGAAGATCAACCAGAGGCAACCGGCTAACACAGAGCAGTCTAAGTTTCTGCATGGTTACCATCAGGGTTCAGCTTCGAATGACATCAGTGTTAGGAGTCCTTCTGGTAAAGCGCTGACGGCACAGCCTGGCAGCATTCAGAATAACAGGGTACGAGCTCAGCCGGTGGCTAGCCAAAGCAATGCCACTTTTCCAAATAATCACGGGAATTATTCCCAGATGAATATCAACCAGCAAGGCTATGGCATTCCGTCCCAGAATCCCACGCTGAACGGAAACCACGGACTGCTAAAGCCAAGGCCGCCCACAGAACCCAAACCCTACAGCCGGCAGCTCTCAGGGCCAACGACAACTGCAGCGCAGCAACTTGGTTGCCCACAATCCAACTTTAGCCCCAAATATGACACCTCCGAGGCCAGTCCAAAAAAACTGGCTGATGTGGGTGTTAACAGTACAAATACCAATGGCATGTTCTACACGGGGCAGATCCACATGTTCAGTTCCAGCAGTCTGGGAATGGCGGATGCAGAGAGCGCAGCCATGGCCGTCGTGGGCTCCCCTGAAACAAATCAGGTCTCCAGCACTGTGGATTCAAACGGAGTAGAGCATCCGCAGATTGACTTTGACGCCATGCTGGATGATGGTGATCACTCCAGCCTCATGTCCGGAACTTTAAGCCCCACCTTCCTCCGCAGCCTATCCCAGAATTCCTCCCGCCTCACAACACCCCGGAACTCAGTGACGTTGCCCCCGGTACCTGCAGGAATCGGCAACATGGCCATCGGAGACATGAGTTCCATGCTGACTGCGCTCGCAGAGGAGAGCAAGTTCCTCAATATGATGTCATAGGAAAAACAGGAAGTACAAGCACAagatttaaagagacagcttTTAAGGTGTATGACTTTGAACAAGGACATAATATTGCatcaacattttttacatgctttttacAAGTGTATTATGTATAGTATTAGTTGGAACTTTGGTAgcatctttttgttttgttgaagaAGCCATACTTTGCCTTAGACCAGTGTATGTACAGCAAATATGAGCAGACAGAGAATTTGATAAGTGACAGTCCTGTATTTTTATACGACTTCTGAACTGATGACATGAACACAGGAACAAGTGCCTCGCTGTGCACAAGCATATGCAGGAATTACATTACTCTAGCAGATGGGACTGTATCTTTTCTGTCCTCTTCAAAGGATATGAAGAGACTTTGTATATtctgtaaattaaatgtaatattatgcTTCTTATCCTTGTTTGTACTAGACAGGAGAGAGGTTCCAAATGAATATGCAgatgaaatattatgaaatgtaaaacttGACACTTGAAAGTGTGGTTCAGAATCAAAAGtccttcattttgttttgatttactGAAGACCTGTATGGAATCACAGGAACATCATATCGCTCTAAAGAGACTGCTTAAGTCTGAACCAAACTCTCACAACTGAGCAAACCGCACAACTGATTATCACGGACTGTTGAACTCAATATACAGAAACAAGTTTGAACTGTCCTGTTGTACACAGATTCCTTTTACAAGGCTGGATCA

Function

GO:

id name namespace
GO:0021534 cell proliferation in hindbrain biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0021508 floor plate formation biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K16798 GLI2; zinc finger protein GLI2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120083 lncRNA downstream 27366 11898871 ~ 11955070 (-) True G81165
TU120092 lncRNA downstream 41551 11939282 ~ 11940885 (-) True G81174
TU120089 lncRNA downstream 44008 11934065 ~ 11938428 (-) True G81171
TU120064 lncRNA downstream 104787 11875488 ~ 11877649 (-) True G81158
TU119981 lncRNA downstream 195448 11784280 ~ 11786988 (-) True G81097
TU120166 lncRNA upstream 175083 12234399 ~ 12234936 (-) True G81233
TU120169 lncRNA upstream 176286 12235602 ~ 12236175 (-) True G81235
TU120171 lncRNA upstream 178493 12237809 ~ 12238334 (-) True G81237
TU120253 lncRNA upstream 311224 12370540 ~ 12372623 (-) True G81295
TU120304 lncRNA upstream 423927 12483243 ~ 12523584 (-) True G81327
XM_043251753.1 mRNA downstream 90244 11884558 ~ 11892192 (-) False traf3ip2b
XM_043251752.1 mRNA downstream 90246 11884558 ~ 11892190 (-) True traf3ip2b
XM_043251762.1 mRNA downstream 123281 11856339 ~ 11859155 (-) True LOC122353870
XM_043251754.1 mRNA downstream 159645 11812570 ~ 11822791 (-) True gnb4b
XM_043251741.1 mRNA downstream 201628 11766831 ~ 11780808 (-) False ero1b
XM_043251750.1 mRNA upstream 91420 12150736 ~ 12161843 (-) True LOC122353860
XM_043251771.1 mRNA upstream 110152 12169468 ~ 12171898 (-) True LOC122353880
XM_043251755.1 mRNA upstream 286223 12345539 ~ 12347685 (-) True foxg1b
XM_043251731.1 mRNA upstream 517703 12577019 ~ 12594787 (-) True tdrd3
XM_043251763.1 mRNA upstream 544350 12603666 ~ 12604703 (-) True LOC122353872
XR_006252156.1 other downstream 81338 11900968 ~ 11901098 (-) True LOC122354705
XR_006252062.1 other downstream 201627 11766831 ~ 11780809 (-) False ero1b
TU119760 other downstream 563106 11403644 ~ 11419330 (-) True G80956
TU119843 other downstream 587560 11393360 ~ 11394876 (-) False LOC122354635
TU119776 other downstream 697147 11263332 ~ 11285289 (-) True mafgb
TU120112 other upstream 14280 12073596 ~ 12074075 (-) True G81192
TU120285 other upstream 386544 12445860 ~ 12447287 (-) True G81318
TU120624 other upstream 758806 12818122 ~ 13057881 (-) False G81512
TU120651 other upstream 830965 12890281 ~ 12896130 (-) False G81523
TU120652 other upstream 833277 12892593 ~ 12896130 (-) True G81523

Expression Profile