RNA id: XM_043251730.1


Basic Information

Item Value
RNA id XM_043251730.1
length 2957
RNA type mRNA
GC content 0.55
exon number 12
gene id clcn4
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11870425 ~ 11883430 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTGACGTTCACACGCGCCCTGACGTCATCACGTTACGTCGCCGTCCTGCCGCATCGGTTTATTCTGCTGTTATGATGGATAAACACTACGAACTGTCGCCGCATCTTTAATCTGTTACACGAACAGCGATATGGCGGAGGCAGAGGGCATCAGCAGTGCCACTCCTACAGAGGAGATGAACGGCGCTGGGAACCTGATGGACTTCTTGGACGAGCCGTTCCCTGACGTCGGCACTTACGAGGACTTTCACACAATCGACTGGTTGAGAGAAAAATCCAGAGACACGGACAGACACCGGAAGATCACCAGTAAGAGTAAGGAGTCCATCTGGGAGTTCATTAAGAGTTTGCTGGACGCCTGGTCAGGATGGCTGGTGATGCTGCTGATTGGTCTGCTGTCAGGTACTCTGGCCGGAGTGATCGATCTGGCTGTTGATTGGATGACGGATCTGAAGGAAGGCGTGTGTCTGTCTGCTCTCTGGTACAGTCATGAACAGTGCTGCTGGACGTCCAACGAGACCACCTTCGCCGACCGAGACAAATGTCCTCAGTGGCAAAAATGGGCCGAACTGATGACGGGATACACTGAGGGCGCGGGTGTGTATGTGCTGAACTACTTCCTGTACGTGCTGTGGGCGCTCTTCTTCTCCTTCCTGGCCGTGTCTCTGGTGCGAGTATTTGCTCCGTACGCCTGCGGATCAGGAATACCAGAGATAAAGACGATCCTGAGCGGCTTCATCATCCGGGGGTATCTGGGGAAGTGGACGCTGCTCATAAAGACGGTGACGCTGGTGCTGGCCGTGTCGTCTGGACTCAGTCTGGGGAAGGAAGGGCCTCTGGTGCACGTCGCCTGCTGCTGCGGGAACCTCTTCTGCAGCCTCTTCTCCAAGTACAGCAAGAACGAGGGCAAACGCAGAGAGGTTTTGTCGGCAGCGGCGGCTGCAGGAGTGTCGGTTGCGTTCGGAGCTCCGATCGGAGGAGTTCTGTTCAGTCTGGAGgagGTGAGTTATTACTTCCCTCTGAAGACGTTATGGCGGTCTTTCTTCGCGGCGCTGGTGGCGGCCTTCACGCTGCGCTCCATCAACCCGTTCGGCAACAATCGCCTGGTTCTGTTTTATGTGGAGTATCACACGCCGTGGTACATGGCCGAGCTGGTGCCCTTCATCCTGCTGGGTGTGTTCGGGGGCCTCTGGGGGACGCTCTTCATCCGCTGCAACATCGCCTGGTGCCGGCGGCGCAAGACCACGCGGCTGGGCAAGTACCCGGTGCTGGAGGTGATCGTGGTGACGGGGATCACTGCCGTTCTGGCCTTCCCCAACCCTTACACCCGCCGCAGCACCAGCGAGCTGATCTCAGAGCTGTTCAACGACTGCGGGGCGCTCGAGTCGTCGCAGCTCTGTGACTACATCAACAACCCCAACATGACCCGGCCCGTGGACGACATCCCCGACAGACCCGCCGGCCCCGGGGTCTACAGCGCCCTCTGGCAGCTCGCGCTGGCGCTCGTCTTCAAGATCGTCATCACCATCTTCACCTTCGGCATGAAGATCCCGTCGGGTCTGTTCATCCCTAGTATGGCGGTGGGTGCCATCGCCGGGCGTATCGTGGGCATCGCGGTGGAGCAGATGGCGTACCATCATCACGACTGGATCATCTTTAAGAACTGGTGTCGCCCAGGAGCCGATTGCGTCACTCCGGGGCTGTACGCCATGGTCGGAGCCGCCGCGTGTTTGGGCGGCGTGACGCGGATGACGGTGTCTCTGGTGGTCATCATGTTCGAGCTGACCGGCGGTCTGGAGTACATCGTTCCTCTGATGGCGGCCGCCGTCACCAGTAAATGGGTGGCCGACGCTTTCGGCAAAGAGGGCATTTACGAGGCTCACATCCAGCTCAACGGCTACCCGTACCTGGACCAGGACGAGTTCACGCACCGCACGCTGGCCACAGACGTGATGCGGCCCCGCCGGAACGAGCCGCCGCTGGCCGTCCTGACGCAGGACAGCACCACGGTGGAGGACGTGGAGACGCTCATCAAAGACACCGACTACAACGGCTTCCCCGTGGTGGTCTCGCGCGAGTCCGAGAGGCTCATCGGCTTCGTGCAGAGACGGGATCTCATCCTGGCCATCAAGAACGCTCGTCAGAAGCAGGACGGGGTCGTCAGTAACTCGGTGGTGTATTTCACCGAAGACGCTCCGCAGCTTCCCGCCTCGAACCCGCAGCCGCTCAAACTCAGACGCGTCCTGAACCTCAGCCCCTTCACCGTCACTGACCACACGCCCATGGAGACGGTGGTGGACATCTTCCGCAAGCTGGGCCTGCGCCAGTGTCTGGTCACACGCAGCGGACGTTTGCTGGGAATCATTACGAAGAAGGACGTTCTGCGACACATGGCACACATGATGAACCAGGATCCCGAGTCCATCATGTTCAACTAGACTGAACCTGTACAGCCTGATCCGTCACTAAACACTAAAACCGAGGCCAAAAGCGGACGGGCGTGACGattcaagtgtttttttactgctgtttttgccaatatttatattttacgtGCATTACTTAGTTTCAGCCGTGATGATCAACTGTTAAACGTGATGAAACCGACtggtttttattgtgtttgctGCTGAAATGTTCAGATGAGGGTCTTATTAGATTAGTTTATTAATTGCAAAAGGTCAGAATAATTCAGAATACTAATCTGCTGCGTGATAGAGACGTTTTTGTCTAACACTATAGGTTTTGTGGGAATCATTtcgttttgttattatttattaatttaacgtGGATGTCagttattttgctgttgtatTGAAAGATGATTATTGTCCTCGTAAAATAAACACTGCATCTCTGTTACAGATATTAATGTTCGTCTGCTACTCCGGTTCAGCACATACAACTGAGGGTATGTTAtgataataaagaaatattattgttaaataacaaagtta

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0044070 regulation of anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0030554 adenyl nucleotide binding molecular_function
GO:0005247 voltage-gated chloride channel activity molecular_function

KEGG:

id description
K05012 CLCN3_4_5; chloride channel 3/4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120014 lncRNA upstream 13106 11851045 ~ 11857319 (+) False shroom2b
TU119632 lncRNA upstream 55694 11773618 ~ 11814731 (+) True G80887
TU119635 lncRNA upstream 95303 11774726 ~ 11775122 (+) True G80889
TU119564 lncRNA upstream 105485 11761639 ~ 11764940 (+) True LOC122353893
TU120141 lncRNA downstream 321738 12205168 ~ 12225492 (+) True G81213
TU120168 lncRNA downstream 351762 12235192 ~ 12236177 (+) True G81234
TU120167 lncRNA downstream 352158 12235588 ~ 12236177 (+) False G81234
TU120170 lncRNA downstream 354388 12237818 ~ 12238356 (+) True G81236
TU120172 lncRNA downstream 355040 12238470 ~ 12238784 (+) False G81238
XM_043251783.1 mRNA upstream 1902 11860659 ~ 11868523 (+) True LOC122353892
XM_043251723.1 mRNA upstream 17972 11827878 ~ 11852453 (+) True shroom2b
XM_043251727.1 mRNA upstream 17972 11827878 ~ 11852453 (+) False shroom2b
XM_043251726.1 mRNA upstream 17973 11827878 ~ 11852452 (+) False shroom2b
XM_043251724.1 mRNA upstream 17976 11827878 ~ 11852449 (+) False shroom2b
XM_043251713.1 mRNA downstream 9918 11893348 ~ 11955071 (+) True LOC122353838
XM_043251714.1 mRNA downstream 9918 11893348 ~ 11955071 (+) False LOC122353838
XM_043251715.1 mRNA downstream 9918 11893348 ~ 11955071 (+) False LOC122353838
XM_043251721.1 mRNA downstream 9918 11893348 ~ 11955071 (+) False LOC122353838
XM_043251722.1 mRNA downstream 9918 11893348 ~ 11955071 (+) False LOC122353838
TU120019 other upstream 7313 11860942 ~ 11863112 (+) False LOC122353892
TU119601 other upstream 170211 11698364 ~ 11700214 (+) False tomm20b
TU119538 other upstream 197487 11580026 ~ 11672938 (+) False LOC122354243
TU119539 other upstream 209483 11580026 ~ 11660942 (+) True LOC122354243
TU119513 other upstream 340789 11528734 ~ 11529636 (+) False eif4a3
TU120138 other downstream 309324 12192754 ~ 12225492 (+) False G81213
TU120140 other downstream 323325 12206755 ~ 12225492 (+) False G81213
TU120139 other downstream 327522 12210952 ~ 12225492 (+) False G81213
TU120226 other downstream 699485 12582915 ~ 12585641 (+) True G81268
TU120348 other downstream 816630 12700060 ~ 12700884 (+) True G81364

Expression Profile