RNA id: XM_043251731.1


Basic Information

Item Value
RNA id XM_043251731.1
length 3562
RNA type mRNA
GC content 0.51
exon number 13
gene id tdrd3
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 12577019 ~ 12594787 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTGTCAGAAGTTTGCGCGTGACGTCATCCGTCTTTGTCCGGCCGCGGCGCGAGCTAAACGCCGTGGAAACAAACACCCGAGCGACGCACGATGTGATTTCGGCGACGTCCCAGACAGCGATTCCGAACGGACCCGTCAGCGTACGAGAAGATGTGCGATCTGAGCTCGGCGCTCACCGGAGAGGGCTGGTACCTTACAGATGAAGGAATAGAGGAGTGTAAAAGTTCATCAGAGAAGGAGAAGACCTCACCGACTGACATCATCCAAGTAGCACTAAACAGTGATCTGAGACCCATAGGAAAGAGCTTTCTGCCGGCGGACATCAACAGCGGACGGATAGAAAAGTTGGAGGGTCCGTGTGTCCTCCAGGTGCAGAAGATTCGCAATGTGGCTGCCCCTAAAGATCACGAGGAGTCCCAGACGGCGCCCAGGATGCTGCGCGTGCAGATGACCGACGGCCACACGGCCTGCACCGGCCTCGAGTTCAAGCATCTGTCCAAAATCAGTCTGAACACTCCTCCTGGAACCAAAGTGAAGCTCCTGGGGGCCGTTCAGGTTAAAAATGGCCTCCTGCTATTGGACGATTCCAAGATCGCGGTTCTCGGAGGCGAAGTGGATCACATGATCGAGAAGTGGGAGTTGCAGAGGAGCCTGGCCAAACACAGCCGGAGAAACATTGCCGCAGAAGGCGGACCTCCTCCGTTCGTTCCCTTCGGACAGAAATGCGCTCATAAGGAGCAGGTGGACAGCAGAGCGCTGGATCAGAGGAAGACCCTGCAGAGCGCCAACGCCGTCAAGTCTGCTGACGACAACGACGAGTTCGAGAAACAAAGAACCGCTGCCATCGCCGAGGTCGCCAAGAGCAAAGAGGCGCGCACGTTCGGCGGCGGAGGCAACGCCGGCGGAAACCTCGCCAACCCGGGATCCACCTACAAGAGCCGGGACGCCCATCAAAGACGACGAGAGGAGAGGGAGAAGCCGTGGACGGAGAACAAGTCAGAAGGAGTTTACAGAGATCTGGTGGATGAGCGCGCTTTGAGGGACATCATGGAGATGGGCTTTAACCGAGAGGCAGCCAGACAGGCCCTCCTGGATAACAACAATAACCTGGAGGTGGCCCTCAACCTGCTGCTCACCGGATCAAACCAGCCCAGAGTGGCCCAGACGGAGCAGAGCCGCCCACCGCCTCGAGGAAAGGGTCGTGGACGGGGACGCTCCAGAcaagatgaggatgaggaggcaGGAGGAAGGCCATCTGGGCCCAGCACACTGTTTGACTTCCTGGAGTCAAAAATGGGGACGTTGTCTGTTGACGAGGCAAAGAACCAGCCTTCACTACAAGACCACCAGTTTAAGATGACTTTCCCCAGCACCGAGCAAACGTCCAGAGATGCCACCCAGTCCAAACACCCCCCTCGAAACGAGGGCCGCTCGCAGAGAAACGACAGACCTCCACGCTTCCAGAAGGACGGAGACTTTCCTAAACCCAGCGCAGCCGCCTCCAGCATCTCCCAACCACAGAAATGGAGGGACGGGGAGCGAACGGGGAGAGGAGGATCAGAGCGGTGGAAGAACGACGCTCAAGatgctaaaaatacatacaGCTTGATGGGGAAGTCCAGGGAACAGCAGGGTCCCGTCGGGTTAAAAGAGTATAGCGGGTCGAAAAGCTTCCCGCAGGAGCCGTATAACGGCGGATTGAAAGAACAGGACGGGACGGGACCTGCTTCGTTTAGGAAAAACCAATCAAACGGTCCCGCGGCACCCAAATACCCGAATCCTGCTGCGTCGGTCACGGATCCCAAATCTAGAAACGAACCCAACAACAGGAGGAAAGGCAAGCCAGACAGACCCAATTCGGGCTACTTCGAGCGCCCCCAAGATGTGACGAAAAAAGACTTTTCGCAAGACCCCGGATCGGGTCAGGTGATCAAAATGGGCGGGGTTTCGAACACGCAGCTCCCCAACGGCGATTTAGAACACAGGCGGAGCGGTCCAATCAAGCTGCATTCTTCAGCCCCGCCTCCAAAACAAACCAACGCGCATAACTCCGCCCCCAAGAAGCGATCCGGACCAATCAAAGGCCCGAGAGAGCCGGCGGACGCAAATAATCACGTCAACTGGAGGGCCGGGGACCAGTGTCTAGCGCTCTACTGGGAAGACAATAAATTTTACCGGGCGAGAATCGACGCCATCCACCCGTCTGGATCCACGGCTGTGGTCGTGTTCAGCGATTACGGCAACTGCGAAGAAGTTCTGCTTCACAATATCAAACCTCTGCACATGGACGTGTGGGATGACGAAGATATTTACTATGAGAATTCACTTGAATTTCGACGAGGAGGAGACGGACAGCCTCGCCGCTCTCGACCGACGCAACAATACTACCAGCCGCCGCGTGCAagagactgacacacacacacacacacacacacacacacacacgcacgcacacaaagCAGCACTCACAACCTTTCACTTGCAAGGAAACTCATCTGATTCGCTCATTactcctggaaaaaaaaacaaaaaaaaacaattagtgCTCTTTTGGTAAACCTACATGCTTAGGTCAGGACTAGATCGGGTTTACGGCCGTTACTCTTCTAGCATCGTGTCGTTTCTATAGAACAGTATAAATGCAACATGATGTTCTCTGCCCATGCAGGTAATTATCGTCTCGTTATCCGTAAGTAAATGACTCTAATTGGGGAAAATGACGTGCAGTTTGTTGTACCTTTTCCGAAGCGTCATTAACGGCTAAACGCATAAGAAATGCTAATCGGTCGAATATCAGAATATttcattccaaaataaaagaatagGAAATCATATTTGCAATGTGACATTATTAGAGTTTTCTTTAATTAGGGCTTCATTAATAATTAGGAATGGGAATCGttaataatttattgctgttattaaaaacttttttttttttttttatagcagtatttttttattgtattactgtatCTCTCTAGCGGAATACtagagtaaaagaaaaatattacagtagcTTCAGTCGCGCAGAACTCAAAATTTCAGTaatgagaaaaatatgcaaatgaaaatgtcacgatgcaaaaaaaaaaaaatctgaacgaTCCTTAAATgggcttcattttctttatgcaaggtttcttgtttttgattttggggtgaaatgtgaCCTGGGCACGAGAAGTAATCAGAGTCACTAAAAAACGATGCCGTCACGTGACGATGCTTCGGTTACACGCCTGACTGAATCCGTACGCTCGGTTAAGACTGCAGCGACAATGCAACAAAACCGTATCCGCGTTTGATCTCGAAGACGGTTTTTAAAACTCAAAGACTGATGATTTGATCTCTAGCTGAGGAGATGAAAGAACATATCTCAACTCTATCTGATCCCTGCCTCGGCACGGGAGACGGATCCGTAAGGGCTTGCAGCACATGTTGCGTCGATGAATTCTGGACTCTGTGAAACTTGCCATGCAAAACGGCTGCTGTACACGGTGACTATTTGTAAAGGACTTGATATTAATGATTATAAAAGCGCTATGCTCTTTTGTTCAA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0035145 exon-exon junction complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0035064 methylated histone binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003713 transcription coactivator activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K18404 TDRD3; tudor domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120330 lncRNA downstream 1906 12574863 ~ 12575113 (-) True G81353
TU120327 lncRNA downstream 8710 12568109 ~ 12568309 (-) True G81350
TU120326 lncRNA downstream 41593 12534950 ~ 12535426 (-) True G81349
TU120304 lncRNA downstream 53435 12483243 ~ 12523584 (-) True G81327
TU120307 lncRNA downstream 83078 12493104 ~ 12493941 (-) True G81330
TU120378 lncRNA upstream 69044 12663831 ~ 12665964 (-) False hesx1
XR_006252068.1 lncRNA upstream 115619 12710406 ~ 12715974 (-) True LOC122353897
TU120626 lncRNA upstream 222966 12817753 ~ 13057247 (-) True G81512
TU120621 lncRNA upstream 223335 12818122 ~ 13057247 (-) False G81512
TU120623 lncRNA upstream 223335 12818122 ~ 13057247 (-) False G81512
XM_043251755.1 mRNA downstream 229334 12345539 ~ 12347685 (-) True foxg1b
XM_043251771.1 mRNA downstream 405121 12169468 ~ 12171898 (-) True LOC122353880
XM_043251750.1 mRNA downstream 415176 12150736 ~ 12161843 (-) True LOC122353860
XM_043251728.1 mRNA downstream 517703 11982436 ~ 12059316 (-) True gli2b
XM_043251753.1 mRNA downstream 684827 11884558 ~ 11892192 (-) False traf3ip2b
XM_043251763.1 mRNA upstream 8879 12603666 ~ 12604703 (-) True LOC122353872
XM_043251778.1 mRNA upstream 12449 12607236 ~ 12609732 (-) True zgc:194981
XM_043251734.1 mRNA upstream 18037 12612824 ~ 12659684 (-) True il17rd
XM_043251772.1 mRNA upstream 69227 12664014 ~ 12667588 (-) True hesx1
XM_043251736.1 mRNA upstream 76380 12671167 ~ 12684887 (-) False appl1
TU120285 other downstream 129732 12445860 ~ 12447287 (-) True G81318
TU120112 other downstream 502944 12073596 ~ 12074075 (-) True G81192
XR_006252156.1 other downstream 675921 11900968 ~ 11901098 (-) True LOC122354705
XR_006252062.1 other downstream 796210 11766831 ~ 11780809 (-) False ero1b
TU119760 other downstream 1157689 11403644 ~ 11419330 (-) True G80956
TU120624 other upstream 223335 12818122 ~ 13057881 (-) False G81512
TU120651 other upstream 295494 12890281 ~ 12896130 (-) False G81523
TU120652 other upstream 297806 12892593 ~ 12896130 (-) True G81523
XR_006252063.1 other upstream 362074 12956861 ~ 12965633 (-) False LOC122353859
TU120815 other upstream 755149 13349936 ~ 13393922 (-) False ccl25b

Expression Profile