RNA id: XM_043251736.1


Basic Information

Item Value
RNA id XM_043251736.1
length 3288
RNA type mRNA
GC content 0.50
exon number 22
gene id appl1
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 12671167 ~ 12684887 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGACTTCCGCGTTTGTGGGCGGATCCTGGTGGGTGTTGATTTGTCAGGAATAAAGCGAAGATCAACATCATAACATTGCGATTTTTGTTTCCGCATAATAATCTAAAAAGCTCGTTGCGCTCGCGGTAAACCTGCAGACATGCCGGGGATCGATAAACTACCGATAGAGGAAACTCTGGAGGACAGCCCGCAGACTCGCTCTCTGCTCGGTGTGTTTGAGGAAGATACTGCAGCCATATCCAGTTATTTCAGTCAGCTCTTCAAAGCCATGCAGAGAATCTACGACGCCCAGAACGAGCTGAGCGCCGCCACACACCTGACGTCTAAATTACTGAAAGACTACGAGAAACAGCGTTTTCCTCTGGGCGGTGATGATGAGGTCATGAGCTCCACTTTGCAGCAGTTTGCCAAAGTCATTGATGAGctcAGCTCGTGTCACGCCGTTCTCTCCACGCAGCTCGCGGATGCCATGATGTTCCCCATCACACAGTTTCAGGAGAGAGACCTGAGAGAAATTGTCATCCTGAAGGAAGTGTTTCAGTTTGCGAGTGACGACCACGACGCAGCCGTCAACAGATACAGCCGTCTGTCTAAACGGAAGGAGAACGAGAAGGTGAAGAATGAAGTGATGGAGGACGTCTACACGTCCAGGAAAAAGCAGCACGAGACCATAATGCACTACCTCGCATCGCTCAACATGCTGCAGTACAAGAAGAAGATCGCTCTGCTGGAGCCGCTGCTGGGATACATGCAGGCGCAGATCAGTTTTTTCAAGCTGGGATCCGAGAATCTGACGCAGCAGTGGGAGGAGTTTCTCACCAACATAGGAACCAGCGTTCAGAATGTCCGCAGGGAAATGGACAGCGACGCCGAAGCGACGGAGCAGACGATTCAGGACCTGAAGGCAGCCAGCGACCCGCTCTACATGCCCGACCCGGACCCCAGCAAAGTCCCCGTGAACCGCAACCTGACCCGCAAAGCCGGCTACCTCAACACGCGCAATAAAACGGGGCTGGTGTCGTCCACCTGGGAGCGGCAGTACTTCTTCACGCAGGGAGGAAACCTCATGAGCCAGTCGCGCGGAGACGTCGCCGGGGGCCTCGTTATGGACATCGATAACTGCTCCGTCATGGCGGTGGACTGCGAGGACCGCCGCTTCTGCTTTCAGATCACGGCCTTTGATGGCAAGAAGGCCGCCATATTACAGGCGGAGAGCAGGAAGGACTGCGAGGAGtggaTAGCAACGATAAACAACATCTCTAAGAGGATATACCTCAGTGAAAACCCAGAGGAGATCGCGGCGAGAGTGAATCAGTCGGCTCTGGAGGCCGTGACGCCTTCGCCGTCTTTCCAACAACGCCACGAGAGTTTCAGACCGAGCACGCAAGGCCGACCCAAAGCGGGGCGTTCGGGCAGTCAGTGCTCGGCGGGCTCCGAGTCTCCGGCTCTGTCGTCCCTGTCTCTGGATTCGCTGGTGGCCCCGGACACGCCCATCCAGTTCGACATCATCTCACCGGTCAGCGAGGAGCACAGCGGTCAGGCTAAGAGCAGCTCTCAGGGCAGGACCAACCCGTTTGGGGAATCTGGAGGGTCGAAATCTGAAGAAAGTGAAGACTCCATTCTGCACCAGCTTTTCATCGTTCGGTTCCTGGGCTCCATGGAGGTGAAGGCCACGGAGAACGCGGACGTCATCTATGAGACCATGAGACAGATCCTGGCAGCCCGAGCCATTCACAACATCTTCAGGATGACCGAGTCTCATCTGCTCGTCACGTGTGAATGCCTCAAgCTCATTGACCCACAGACACAAGTCACAAGACTGCGGtttccTCTCTCCAGCGTGGTGCTGTGTGCGTCTCATCAGGAGAACAAGCGCTTGTTTGGTTTTGTGCTGAAGACGGCCGGAGGACGAGTGGACGGGCGGCCCGTTACAGTCTGCTACGTCTTTGAGTCAAACAACGACGGAGAGAAGATCTGTGACAGTGTAGGACTGGCGAAGCAGATCGCCCTCCACTCTGAGATGGACCGCAAAGCCACAAGGAAACAGAGAGAGCTGGACAAAGCCAAGGAGAAACAACAGGAGGAActtcataaacaaaaacagatagAGAAGGATCTGGAAGAACAAAGTCGTTTGATAGCCGCCTCGAGTCGACCCGGCCAACCAGCTGCCGACGGACAGTTCTTGGTCCTTagcaacagccaatcagaggacaGCGACGCCGGGGAGGAGGGGCAGAAAAAGGGCGAATCGGAGGCCTGACGGAAAGCGTTCTCTTCTTTGGATTCCACGGATATCTCTTTCTGTTCTTCGAGGGTTCTCCTGAGCGGCCCGCAGAAAACAACGCTGTAATTCGCGACTgcaaaacatgacaaaacaaaaaaaaaacggacgCTTTGGGGGAGAACCTCTCCAAAGCTGTTATTTGTGAGAATCCTGTATTTTTTACCATATCCGTTACTGAACTGCATTTGCTTTTAGAGGGTTTTATATACGTGCGTGTGTGAACGAAGCGGAGGAataataactgatttaatgCTGTACGCTGGCCTTGTTCACGTTCTTAGGGCTGCGTGTGTTCTCGTTCGTATCGCGTCCGACCGGGAACCTCGCGAAATGCGTCAAGAACGTGATTTATTACAGAAAGCGAATCTTAATTGTCCTAAAACtggcttttttttcatgcaaattaaTTCTTTCTAAACTAAGGGGTGTTCTTGATTTATTTCTGCGAGGTTCATCCCGCTGCATTTCGAAACGATTTAATGAgcttatattttctttgtaattaataCAGTTCTGGTTTTTGTCTATAAGCTGTTTATCAAAAACACGCATCTGTTTGTTTTACTGACGGTTTCAGTGTTTCTATCTTAACACTAAGAaacaaagtatttaaaaatcatgtgaTCCGATGCCTTTAAGCTTAGGATATACttagatttttgttatttttattttatttttttaagatgttcgGAGCCTGGCCCAATGCATTGAAACGCTTCAGTCTGTGGATGAAAGGAAAAGTTGATGGATTtgcaaactgaaatatgaaTGTGACACGGCGAAAGTTTCTTCGAGAATCAAAAAGTGTCTCATTCGCTGATGATGTGGTCTTTATGGTTCATATTCTGAGACGCTTCCATGGAGCTCGAAGCATTTGcagcattttaatttgtaaatgattatttcTAACCTTGTTTGTGTCTAATGTCTTTATACAAAATCAGTTGATGGATTCGTGGGGTGCAATGAAACATGGTATTAAAACTTCTTTCAAGTAA

Function

GO:

id name namespace
GO:0005769 early endosome cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120378 lncRNA downstream 5203 12663831 ~ 12665964 (-) False hesx1
TU120330 lncRNA downstream 96054 12574863 ~ 12575113 (-) True G81353
TU120327 lncRNA downstream 102858 12568109 ~ 12568309 (-) True G81350
TU120326 lncRNA downstream 135741 12534950 ~ 12535426 (-) True G81349
TU120304 lncRNA downstream 147583 12483243 ~ 12523584 (-) True G81327
XR_006252068.1 lncRNA upstream 25519 12710406 ~ 12715974 (-) True LOC122353897
TU120626 lncRNA upstream 132866 12817753 ~ 13057247 (-) True G81512
TU120621 lncRNA upstream 133235 12818122 ~ 13057247 (-) False G81512
TU120623 lncRNA upstream 133235 12818122 ~ 13057247 (-) False G81512
TU120625 lncRNA upstream 133235 12818122 ~ 13057247 (-) False G81512
XM_043251772.1 mRNA downstream 3579 12664014 ~ 12667588 (-) True hesx1
XM_043251734.1 mRNA downstream 11483 12612824 ~ 12659684 (-) True il17rd
XM_043251778.1 mRNA downstream 61435 12607236 ~ 12609732 (-) True zgc:194981
XM_043251763.1 mRNA downstream 66464 12603666 ~ 12604703 (-) True LOC122353872
XM_043251731.1 mRNA downstream 76380 12577019 ~ 12594787 (-) True tdrd3
XM_043251740.1 mRNA upstream 336 12685223 ~ 12695730 (-) True asb14a
XM_043251775.1 mRNA upstream 15340 12700227 ~ 12701654 (-) True rps23
XM_043251768.1 mRNA upstream 35029 12719916 ~ 12724608 (-) True arf4a
XM_043251769.1 mRNA upstream 40887 12725774 ~ 12728048 (-) True LOC122353878
XM_043251767.1 mRNA upstream 44444 12729331 ~ 12732117 (-) True LOC122353875
TU120285 other downstream 223880 12445860 ~ 12447287 (-) True G81318
TU120112 other downstream 597092 12073596 ~ 12074075 (-) True G81192
XR_006252156.1 other downstream 770069 11900968 ~ 11901098 (-) True LOC122354705
XR_006252062.1 other downstream 890358 11766831 ~ 11780809 (-) False ero1b
TU119760 other downstream 1251837 11403644 ~ 11419330 (-) True G80956
TU120624 other upstream 133235 12818122 ~ 13057881 (-) False G81512
TU120651 other upstream 205394 12890281 ~ 12896130 (-) False G81523
TU120652 other upstream 207706 12892593 ~ 12896130 (-) True G81523
XR_006252063.1 other upstream 271974 12956861 ~ 12965633 (-) False LOC122353859
TU120815 other upstream 665049 13349936 ~ 13393922 (-) False ccl25b

Expression Profile