RNA id: XM_043251737.1


Basic Information

Item Value
RNA id XM_043251737.1
length 2558
RNA type mRNA
GC content 0.42
exon number 7
gene id si:ch1073-365p7.2
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11782659 ~ 11794097 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaacatgTAGTTGAAGTAAACTGTGTTCATCCTGGTGTCAGTCTGGAAGATTTGTATATTCgcttaaatgtgattttatagattttttgggggttttgcagagttttttaattgtagtttgatTCTCTTTCCTTACTTTTGCATGGTATTTTGgataacaaaacagaaacatatgCAAGAACGATGGTTGAAGAGTTGAGAGCAGTTCTGATTGGAAGGCATCACTCTGGAAAAACATCGGTGATTAACACTATTTTAGATACCAGTGAAACAGAAGCTGAAGGAGATGATCATATTAAGAGAGAGGGGTTTATTGAGGGAAAGAAAGTCAGTCTGGTTGAAACTCCTGGCTGGTGGAAAACCTTCAATCCGAGAGATTTATCCAACATCTCCAAACAGCAGCTGCTTCTCAGGATTTCTCTGATTTCTCCCGGACCTCACGTGGTTCTGATCGTGATTCGGGCCGATTCTGCGTTCACTGACCCTGATGAGAGGTTTCTGAAGGAGCATGAGGAGCTTCTGGGTCCCAGTGTCTGGACTCACTCCCTCGTCATCTTCACAAGAGGAGATTTAATTCAACGAGAAGAGATAGAGCGGCGTATTCGAGAAGACGGGTCGGCTCTCAAGCGGGTCATTGAGAGATGCGGaaataaatatcttgtttttaacaattcaaacCATCACGACCGAACCCAAGTTAAGGAGCTGTTTAAGAAAACTGAAGGAGTTGTTGGGAAGAATAACGGCAAGCTTTTTAACATCGACCTGGAAAAAGTAAAGGACGTCAATGAGCAGTGGGAGGAAATTCAGACCAGAGCGAATTCTAGAAAATCCAGAGTACAGGAGGAACGCTCGATACTTCAAGAGAAAGcaCATGTGCATGGTCTTGAAGAGATCAGAGTTGTTTTGCTGGGATGGGTGTTTTGTGGAAAGAGTTCAGCCGGAAACATCATCTTGAACCAGGATGAATTTGCCACAGGAGGAAGAACCAGAGAATGCTCGAGAGGGTTTGGAGATGTAGACGGAAGGAAGATGACGGTGTTGGACACTCCAGGCTGGTGGAAGTACTTTGCATCTGAATTTAACCCCGATTTCATTAGATCTGCGATCTTAGAAAGCGTTTCAGAGTGTAAGAAGCTCCCTCACGCCATGCTGCTCGTGATTCCTGCAGATACATCatttcaggaagaacaaaagagaATCACTGAGCAAAATATGTCCATCCTGGGAGACGGCGTCTGGAGACACACCATCGTTTTGTTCACGTGGGGCGACCGATTCAAAGACATCTCCATCGAGCAGCACATCGAGGCTGAAGGAGAAGCTCTCCGGTGGCTGATTGAGAAATGCAGGAACAGATATCACGTCTTCAACAACGCGGACAAGAAGAATCGAGATCAAGTCACAGAGCTGGTCCAGAAGATCGAGGAGATGGTGGCAGAAAACTGCTCGTTTCGCCTCAATGCACCGAAAATCTGCGACGAGAAAAGCTGTCTGAGAAACGACAAACAGGAGGATCTCGATATGAAGATCAAGCTGAAGGATGTCTGCCACTTTCTGGACGAGGGCTTTAAGAGAGAAGCTGGAGAGATAAGAGGGAAGATAGAAAAGCTATGCATGGATATCTTGGATGTACAGCTAAACCTTCAGGACTCTTGGAGTATGGATGATCCTATTGACTTAGCCCGAGACGATTCCCGTAGACCACTAAAAGCGATCCGTGCACCTCAACAAGACACCACCTCTAATCCGATTAATGCTCTTCTTGTGAGAGAGTTCAGCAGATGGGAAAGTATCATCATAGACGGTGTTCAGGAAAGCCTGCAGGACATCAAATCATCCATTGAGCTCTCTCAGGCTGAGAAGAGGCAGAAGACAGAGGATGCTGTTGAGAGATGGCTACAGAACTGCTACCACTATGTTGAACATACTATTGATAAAATACGAGATCCAGAAACAGCGATCAGGagaaaaagactaaaaatacaATGATTACTGAATAATGtactgtttgtctgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatgtatacacacaatGCATGATGTTATTTAATTAGGATTTTATATGTCCCTGAATCACTTCACATGAGTTATAGACGTTGCagctgtattttgtgttttgcttgAGAACAAGTTTACAGTCATCTTCTCTCTGTTGAGTCCACAAATGAAGGACAGTGTTTATAAACGGGCCACGAAAAGTAAGCAAATCTTTTGAAGCGCAAGGAGAAAATTCAAAGTGAAGCAGCGGCGAGCTGGTTGAGGAAACTTAAAAGGCGTAAGTTGAGGAAACTTAAAAGGCGTAAGTTGAGGAAACTTAAAAGGCGTAAGTTGAGGAAACTTAAAAAGGCGTAAGTTGAGGAAACTTAAAAGGCGTAAGTTGAGGAAACTTAAAAGGCGTAAGTTGAGGAAACTTAAAAAGCGTAAGTTGAGGAAACTTAAAAGGCGTAAGTTGAGGAAACTTAAAAGGCGTAAGTTGAGGAAACTTAAAAAGCGTAAGTTGAGGAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119635 lncRNA upstream 7537 11774726 ~ 11775122 (+) True G80889
TU119567 lncRNA upstream 16605 11736372 ~ 11766054 (+) False G80847
TU119569 lncRNA upstream 16605 11736372 ~ 11766054 (+) True G80847
TU119568 lncRNA upstream 16605 11741614 ~ 11766054 (+) False G80847
TU119563 lncRNA upstream 17719 11761357 ~ 11764940 (+) False LOC122353893
TU120014 lncRNA downstream 56948 11851045 ~ 11857319 (+) False shroom2b
TU120141 lncRNA downstream 411071 12205168 ~ 12225492 (+) True G81213
TU120168 lncRNA downstream 441095 12235192 ~ 12236177 (+) True G81234
TU120167 lncRNA downstream 441491 12235588 ~ 12236177 (+) False G81234
TU120170 lncRNA downstream 443721 12237818 ~ 12238356 (+) True G81236
XM_043252113.1 mRNA upstream 67308 11706108 ~ 11715351 (+) True tbce
XM_043252115.1 mRNA upstream 67308 11706108 ~ 11715351 (+) False tbce
XM_043252114.1 mRNA upstream 67308 11706108 ~ 11715351 (+) False tbce
XM_043252117.1 mRNA upstream 82445 11698324 ~ 11700214 (+) True tomm20b
XM_043251529.1 mRNA upstream 182961 11597790 ~ 11599698 (+) True map1lc3c
XM_043251733.1 mRNA downstream 1438 11795535 ~ 11811706 (+) True mfn1b
XM_043251723.1 mRNA downstream 33781 11827878 ~ 11852453 (+) True shroom2b
XM_043251727.1 mRNA downstream 33781 11827878 ~ 11852453 (+) False shroom2b
XM_043251726.1 mRNA downstream 33781 11827878 ~ 11852452 (+) False shroom2b
XM_043251724.1 mRNA downstream 33781 11827878 ~ 11852449 (+) False shroom2b
TU119601 other upstream 82445 11698364 ~ 11700214 (+) False tomm20b
TU119538 other upstream 109721 11580026 ~ 11672938 (+) False LOC122354243
TU119539 other upstream 121717 11580026 ~ 11660942 (+) True LOC122354243
TU119513 other upstream 253023 11528734 ~ 11529636 (+) False eif4a3
TU119512 other upstream 255617 11525059 ~ 11527042 (+) True rpl37a
TU120019 other downstream 66845 11860942 ~ 11863112 (+) False LOC122353892
TU120138 other downstream 398657 12192754 ~ 12225492 (+) False G81213
TU120140 other downstream 412658 12206755 ~ 12225492 (+) False G81213
TU120139 other downstream 416855 12210952 ~ 12225492 (+) False G81213
TU120226 other downstream 788818 12582915 ~ 12585641 (+) True G81268

Expression Profile