RNA id: XM_043251752.1


Basic Information

Item Value
RNA id XM_043251752.1
length 1483
RNA type mRNA
GC content 0.58
exon number 9
gene id traf3ip2b
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11884558 ~ 11892192 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGCGTTCCTCCTCCGAAACGAAACGAAACGCGCATGTTTGGTGGAACTAGTAGCCTGTTGATACGCGGGTTATAGTACAACCTCAGACTGACTTCACAAACGCTGTAGAAAGTGAGAAAACGAGCATCGACATGACGGACGCGTGACTTCCGGAAGTGACTCTAACTCCCGCGGCTCGCGCTCAGTTTGCAGTGTGAACCGTGCCGGTGTTTTCTGTCCGGTCAGACCCATGGCCCACGGCAGCGATCGCTACGCGTCTCTGAACTGTCCCGAGGAGAATGACGAAACCAGGAGCGAAGAGTTCGAGTCGGATCTCCTCCGGGAGAGCGCAGGGATGTACGCCCGGCCCTACGCCCACCAGACGCCCTTCCCCAGCTGGGACGGCCCCGTCAGGGCCCCGTCTCCTCACAGCCTGCCCTCCTGCCTCCCGTCGGCCGTCTACCAAACGCTCTCGGACGGCGGCTCGTTTCTTCCCGGCAGGCCTCGCTCTCTGCCGAGTCCGAGTCTGGAGAGCCTGGAGTATCCCGGATCTCTGCGCTCCTTTCCTCCGTCCGGCCGGCACCCCGAGGCTTACCTTCATCCGTTGGGCCCCGTGATGCCCGTCCACCAGTGCAGCTGCAGACCCGGACATCAGCCGGCCTACGGACCCTCAGGCCTGCTGCAGTACAGACAGATGGACACGCGCTTCTCTGAAAAtgacaATGCATCCGTGAACTCCAGACAGGCCAGTCAGTGTATCACACACCTGCCACAGGAACAGAGGAAGGTGTTCGTCACGTACGAGGCCGACAGTGAAGAGCACCTGAAGGAGATCATTAAGTTCGTGTCTTTGCTGAGGAACAACGGCTTCGACATGCACATCGACGTTTTCGAGCAGCAGCTGAACAGCATCAGCAAGATCGACTGCATGGAGAGATACCTCAATGAGaaaGATTAcctgatcatcatcatcatcagcctGAGGTATTATGAGACCATATCAGGTTTGACTAGCAGCGTGGAGGGTGACGAGAGAACCTCAAACACCGTTTACATCCACAAACAGCTTCAGAGTGAATTCATTCAGAACGGCTGCAGGAACTACAGGTTCATTCCCATCCTGTTCCCGGGGGCTAAAAAGTGCTATGTTCCCACCTGGCTGCAAAACACGCACGTCTACAGCTGGCCGAAAGACCGGGACGATATTCTGCGCAGGTTGATGCGCGTGGAGAAATACAACCCTCCTCCCATCGGCCCTCTGCCGACCATCGTCTCCGTTCCCCTGAACTAGAGAACACCGGAGCAGACTTCAGCCAAAGCGGAAAACGCGCTCATCCTCCGGTCGTCCCGAGTCCGTGTCTTCGCCGGGTTTCGGAGAAGTGTGGCATTGCTTGGCGGCGTCTCAGCGGTGcaggcgaatgggtgccgtcgggacGAGAGCCTGGTGAAAACCTCGCAGTGATCCACAGAGCTCCGGTCCATCGGTTAACATCCGGAGAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120064 lncRNA downstream 6909 11875488 ~ 11877649 (-) True G81158
TU119981 lncRNA downstream 97570 11784280 ~ 11786988 (-) True G81097
TU119933 lncRNA downstream 118487 11736379 ~ 11766071 (-) False G81057
TU120083 lncRNA upstream 6681 11898871 ~ 11955070 (-) True G81165
TU120089 lncRNA upstream 41875 11934065 ~ 11938428 (-) True G81171
TU120092 lncRNA upstream 47092 11939282 ~ 11940885 (-) True G81174
TU120166 lncRNA upstream 342209 12234399 ~ 12234936 (-) True G81233
TU120169 lncRNA upstream 343412 12235602 ~ 12236175 (-) True G81235
XM_043251762.1 mRNA downstream 25403 11856339 ~ 11859155 (-) True LOC122353870
XM_043251754.1 mRNA downstream 61767 11812570 ~ 11822791 (-) True gnb4b
XM_043251741.1 mRNA downstream 103750 11766831 ~ 11780808 (-) False ero1b
XM_043251742.1 mRNA downstream 104265 11766831 ~ 11780293 (-) True ero1b
XM_043251779.1 mRNA downstream 132036 11717262 ~ 11752522 (-) True LOC122353888
XM_043251728.1 mRNA upstream 90246 11982436 ~ 12059316 (-) True gli2b
XM_043251750.1 mRNA upstream 258546 12150736 ~ 12161843 (-) True LOC122353860
XM_043251771.1 mRNA upstream 277278 12169468 ~ 12171898 (-) True LOC122353880
XM_043251755.1 mRNA upstream 453349 12345539 ~ 12347685 (-) True foxg1b
XM_043251731.1 mRNA upstream 684829 12577019 ~ 12594787 (-) True tdrd3
XR_006252062.1 other downstream 103749 11766831 ~ 11780809 (-) False ero1b
TU119760 other downstream 465228 11403644 ~ 11419330 (-) True G80956
TU119843 other downstream 489682 11393360 ~ 11394876 (-) False LOC122354635
TU119776 other downstream 599269 11263332 ~ 11285289 (-) True mafgb
XR_006252140.1 other downstream 623438 11251255 ~ 11261120 (-) True si:ch73-100l22.3
XR_006252156.1 other upstream 8778 11900968 ~ 11901098 (-) True LOC122354705
TU120112 other upstream 181406 12073596 ~ 12074075 (-) True G81192
TU120285 other upstream 553670 12445860 ~ 12447287 (-) True G81318
TU120624 other upstream 925932 12818122 ~ 13057881 (-) False G81512
TU120651 other upstream 998091 12890281 ~ 12896130 (-) False G81523

Expression Profile