RNA id: XM_043251755.1


Basic Information

Item Value
RNA id XM_043251755.1
length 2147
RNA type mRNA
GC content 0.48
exon number 1
gene id foxg1b
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 12345539 ~ 12347685 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGGAGATCAGAGTGAGCCGACCATGGTGCAGAAGTCGACGTCGTTCAGCATCAAGAGCCTGTTACTCCCGTCGAAGTTTGACGACGAGAGCGCGGAGCGCAGCGGCAGCCCGGCGGCTCCGGACTCGGACAAACCCCCGGAAGCGTCCGAGACGGACCCCGCGCAGCGAGACGCGGAGGAGCAGCCGTCCAAAAAGGGAAAGAAATTCGACAAACCTCCGTTCAGCTACAACGCGCTCATCATGATGGCCATCAGACAGAGTCCCGAGAAGCGGCTCACGCTCAACGGCATCTACGAGTTCATCATGAAGAACTTCCCGTACTACCGGGAGCACAAGCAGGGCTGGCAGAACTCCATCCGGCACAATCTGAGCCTCAATAAGTGCTTCGTGAAGGTACCGCGGCATTACGACGATCCCGGGAAAGGGAACTACTGGATGCTGGATCCCTCCAGCGACGACGTGTTCATCGGCGGGACCACCGGGAAGCTCCGCCGGCGCTCGGCGACCTCGCGGGGCAAGCTGGTGATGAAAAGGGGCCTCCGCTTCGCGCCCCTCGGTCTCGGACTCGGCGAACGCCCGAGCAACCCGCTTTACTGGCAGCTGTCTCCGTTTTTACCCCTGCACCATTCGCACTATAACGGCTCCGCGCACGGATTTCTAAACCAGGGACACGCGTACGGATCGTTACTCCCCGGCGTGGAGCCGCTCGGGAACGGGGACATGTCTCGCCCCATTCTGGGAGCCTCTAGCGGGGGCATCAACGGGTACGGCGTGTCTCCGCCGTCCGCGGCCGGATTACTTTCAGGGCACAACGGATACTTCGTACCGGGCGCGCAGACGCCGCAGCCGCTCCCGAGCGCGCCGGGGTACGGCCTCTCCGGCTCTCCGTCCCCGCTGCTGTCGGATTCCCTAAGAACTAGCTTGCCGTCCTTCACAGCGCCGCTCTCCAGCGGACTCCTGTCTCAACACAAGCGCGTCGCGCCCAACGCGTTCCTGAGCTGAGCGCCGCGCGCCTCCTCCAAGGGGAATATCCAAACTTTCCTAGAAAACCTCGCCACGAAACGTGCAagctgttctgtttttttgtttttttgtgaggACTGCGCGTctgatttcttcttcttctgtctatttaagtttattttataatagtagTATGATGTTATGCCAAAGGCAATAACCgtgcgtgtttgtttttctttctttctttcttttttttttaagtattatttatagtatttctTTGTGAATGACGGTTTTGTATTTATTCGAAATGTCCTGTTACCGCGGGATACCTTTATTACTAGATGTCTGGCACATATTATTCGTTTAGTATGactaattccttttttttatttatgtccCAAACTGTGAATGCGCCTTAATATCTTAAATCAGGGTTGAGCGTTCGGACTGTCTCAGGTGTGCGTTCTGACAATGAAACATTACGAttatgactattattattattattattattattattattagctgtGTGAACCTGACATGTGGTAAGATGTGAACCTATATGCAATGTTTTCTGAGTTTGCCTGAGGGCCTGTGTTCAGAGAGGTCATGCAATGACTTACTATAGCAAAGCTAAGCTACTGAATTAAAGCACTGGTTTAAATGAGCTCTGTGTggatgattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtacatactgtcacgtaaaatgctgtttagtgaCGACACGAGCTTTTGTTTACACACGTAACAGTATTTTAATACGGTTTTTACGCGTGGAGGTGATTCAGCACCAAAGACGGAtcattaatgctttttttttttgtttttgtttttttgaagttaTTTGCTCCCACGGCATCCCGAAGCCATCGTTTCAACTCTCTGCGCGAATCAGAAATGTGATTTCTAGAGCTGTCTGTTCCCCTTTTAACCAACGTGTGATTTATAGTTCTGCACCTTTAGTTGTCACGGTCGTCCAATGTGCAGTTTTGTACtagtttgtctttttctttcttgtatatatatatatgcctgaACGCACGTtcagaacaaagaaataaagtatTGGAATATTTCTGTACGAA

Function

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0007389 pattern specification process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K09385 FOXG; forkhead box protein G

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120171 lncRNA downstream 107205 12237809 ~ 12238334 (-) True G81237
TU120169 lncRNA downstream 109364 12235602 ~ 12236175 (-) True G81235
TU120166 lncRNA downstream 110603 12234399 ~ 12234936 (-) True G81233
TU120083 lncRNA downstream 390469 11898871 ~ 11955070 (-) True G81165
TU120092 lncRNA downstream 404654 11939282 ~ 11940885 (-) True G81174
TU120253 lncRNA upstream 22855 12370540 ~ 12372623 (-) True G81295
TU120304 lncRNA upstream 135558 12483243 ~ 12523584 (-) True G81327
TU120307 lncRNA upstream 145419 12493104 ~ 12493941 (-) True G81330
TU120326 lncRNA upstream 187265 12534950 ~ 12535426 (-) True G81349
TU120327 lncRNA upstream 220424 12568109 ~ 12568309 (-) True G81350
XM_043251771.1 mRNA downstream 173641 12169468 ~ 12171898 (-) True LOC122353880
XM_043251750.1 mRNA downstream 183696 12150736 ~ 12161843 (-) True LOC122353860
XM_043251728.1 mRNA downstream 286223 11982436 ~ 12059316 (-) True gli2b
XM_043251753.1 mRNA downstream 453347 11884558 ~ 11892192 (-) False traf3ip2b
XM_043251752.1 mRNA downstream 453349 11884558 ~ 11892190 (-) True traf3ip2b
XM_043251731.1 mRNA upstream 229334 12577019 ~ 12594787 (-) True tdrd3
XM_043251763.1 mRNA upstream 255981 12603666 ~ 12604703 (-) True LOC122353872
XM_043251778.1 mRNA upstream 259551 12607236 ~ 12609732 (-) True zgc:194981
XM_043251734.1 mRNA upstream 265139 12612824 ~ 12659684 (-) True il17rd
XM_043251772.1 mRNA upstream 316329 12664014 ~ 12667588 (-) True hesx1
TU120112 other downstream 271464 12073596 ~ 12074075 (-) True G81192
XR_006252156.1 other downstream 444441 11900968 ~ 11901098 (-) True LOC122354705
XR_006252062.1 other downstream 564730 11766831 ~ 11780809 (-) False ero1b
TU119760 other downstream 926209 11403644 ~ 11419330 (-) True G80956
TU119843 other downstream 950663 11393360 ~ 11394876 (-) False LOC122354635
TU120285 other upstream 98175 12445860 ~ 12447287 (-) True G81318
TU120624 other upstream 470437 12818122 ~ 13057881 (-) False G81512
TU120651 other upstream 542596 12890281 ~ 12896130 (-) False G81523
TU120652 other upstream 544908 12892593 ~ 12896130 (-) True G81523
XR_006252063.1 other upstream 609176 12956861 ~ 12965633 (-) False LOC122353859

Expression Profile