RNA id: XM_043251850.1


Basic Information

Item Value
RNA id XM_043251850.1
length 3234
RNA type mRNA
GC content 0.46
exon number 12
gene id ldb1b
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11470319 ~ 11485482 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGACTTCCTGTTGACTGGGGAACACAGAGGGGTAGATAGTCCTCAGCCTTCCCCCATCGCTCTAACTACACCCTCCAGCCCAGAGCCTGGCCTCCAGAGATACTCCAGCAGCATGACGGAGCAGCTCCACACGCTCGGCTGTTCCTCCAAGTCGTTCAAGCTGTACTCCCCAAAGGAGCCCCCGAACGGAAGCGCTTTCCCTCCCTTCCACCCCGGCACCATGCTGGACAGAGACGTGGGCCCGACGCCCATGTATCCCCCCACATACCTGGAGCCGGGCATCGGGAGACACACACCTTATGGGAATCAGACAGACTACAGGATATTTGAACTCAATAAGCGGCTTCAGAACTGGACAGAGGAGTGTGATAATCTGTGGTGGGATGCTTTCACTACTGAATTCTTTGAGGATGACGCTATGCTCACCATCACGTTTTGTCTGGAGGACGGTCCTAAACGATACACGATCGGCCGGACGCTGATCCCTCGTTACTTCAGGAGTGTGTTTGAAGGCGGCGCCACTGAGCTCTACTACATTCTCAAGCACCCGAAAGAGTCCTTCCACAACAACTTTGTGTCTCTGGACTGTGATCAGTGTACGATGGTCACGCAGAACGGCAAACCCATGTTCacgcagGTGTGTGTGGAGGGCCGTCTGTACCTGGAGTTCATGTTCGATGACATGATGAGAATAAAGACGTGGCATTTCAGCATCCGGCAGCACAGAGAGCTGATTCCCCGCAGCATCCTGGCCATGCATGCTCAGGACCCGCAGATGTTGGATCAGCTGTCCAAAAACATCACCAGATGCGGCCTGTCGAACTCCACCCTCAACTACCTCCGAttgTGTGTGATCCTGGAGCCCATGCAGGAGCTGATGTCCAGACACAAGACGTACAGCCTGAGTCCCCGAGACTGTCTGAAGACGTGTCTGTTCCAGAAGTGGCAGAGGATGGTCGCTCCTCCAGCTGAACCGGCCAGACAGGCACCGAGCAAGCGGCGGAAGCGCAAGATGTCGGGCGGCAGCACCATGAGCGCCGGCGGAGGCTCcaataacaacagcaacagcaaGAAGAAGAGCCCAGCAAACAGCTTCCCGCTGTCCAGTCAGGTCCCAGACGTGATGGTGGTGGGCGAGCCCACGCTGATGGGCGGGGAGTTCGGGGACGAGGACGAGCGTCTGATCACGCGGCTGGAGAACACGCAGTTCGACGCGGCTAACGGCATCGACGACGAGGACAGCTTTAACAACTCGCCCGCGCTCGGAGCCAACAGCCCCTGGAACAACAAGCCTCCGTCCAGCCAGGAGGGCAAGAACGACAACCCCACCTCGCAGGCGTCTCAGTGAGGGGCGGGGCCGGGGGCGGGGCCAGGGGAGAGAGGGGTGCGGCCGACTCGTTCATCTACCTGCGGCGGCCGGTCTTCCTGTCGGAGGAGGAAGTGACCCTGAGCGCCGCGCCGCAGCAGAAGCCGTTTGCTCCACACAGGACAGTTTTTATCCACACTCCTGGTTTTGTTGGTGATTTTACAAGGAGCCTGTAGATAGTTCATATGTTTAAGTTAAGACGAAGCGGAGAGATCTGACCACGTAAAACGCCAACAAGACCAAGAAACATCCAGCTCCTGTTTCACTCACaagaaatgacattttgcatGAGGAAAATTTATACTGTTTTGTATtgaagcttgtttctgccactgaataaaaatttaaaaaaggtaattgcagCTTTTTAGCTCCCAACTTTTTCTCTcagaattgcttttttttttttcttgcattttttttatcacaattctgatttttttttttgcatgtagtTTTGACGTCTTGCAACAGCAAATTAATCACATTTCTGATCTTTTTCCTgacgcaatttttttttttaattcaatttcttttttttgcagtagtTGCATTTTTatctcaattctgactttttcgtTTACAATTCTCTcaattgatataaaaattaaatatataaatatggttatatataaactaaaatagtaAGAAACCAGTCTTTTTCCTCTCCGTTGGACTTCATTGTTTGCAACACAGTCTGAATAGTcgcaattacctttttaatttttgaatgagCTTCTCAGTTTCGTTACTGTATTGCAACgagagcgtttttttttttaaaatgtgaatccGCATCAATCGAAACCCCACCGTTCCCGTCTTGCATCACAGTAACGAGGACTTCCTGAGAAATGTCGAGCGCTGGTTTTAAAGGATGGCATTTTCTTTTCAGCAGAATGTCGTTTCTTATGTTTGGAGTAAGACGTCTCACAGCAGATTAATTTTCAGCCTCACATCTTCCTCTGATCGCCGGAGGATGTTTAATATCACATGAAGAGCGTTTCGACTCGGACGCGTTTTGGAGAATTTTATCCGTGTTTTATACCAGCCTCTATTTCcctagaatgtttttttttttttgttgttttggtttctttttcttttttttactgacgTTGAAAGCTGCAAACCAAGGAGTAACAGAACCGTGGAGGTCCTTAAAGATTTCAAGCCTCAGATTCTATTggtttgtcttatttttaaagAGAGTCGTTTAGCGTGGGCTTTGATTGATTTCTGTGTACTTGTGCTTGTATATTTAAGGTAGTAGCAGAGTTCTGTATAACTGTATTGAGATGTATTCCTCCTTAGAGTTACATAAAGCCATTCTGAtctaatgtgtaaaaaaaaaaaaaaaaaaggaaaaaaaaagaaaaacgtgaAAGATGAAAACACACCAACCTCGTCTTTTCCCctcttgattatttttttactttgcatacGACTGATGGAGTGAAATCAAGGGCACGGTCTGTTTGTTGCCTGATCGTTTCAGATTTTGATCACAGAAGACTTCAGTGTTCGTTCTCGTCGTCATCTTCTGTTCTTCACGTGTTTAAGGAGACCAACTGTGATCAGCTAGTCATGTTTCGTTAACATGTTAGTTGTTTTCTTTCACCCGCACACCCCAAACTGCTGAAACTCAGATTGTTTTCTACTCTCAGATTATTTccgttctctctctttctgaccAGCTGAATCGATCTGAACGAATTAAAGGTCTGCACTTGTAATTGAAACAAACTGGTGATCTTTTCCACCTTTAACCTTGTAGATGCCCTGTTTGATATAACtttgttttcttaatttctgcccttgattaaattaatgtatggaaccaataaaatatgaattttcacTTTAA

Function

GO: NA

KEGG:

id description
K15617 LDB1; LIM domain-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119287 lncRNA upstream 18181 11449049 ~ 11452138 (+) True G80668
XR_006252074.1 lncRNA upstream 22798 11443640 ~ 11447521 (+) True LOC122353945
XR_006252073.1 lncRNA upstream 22799 11443647 ~ 11447520 (+) False LOC122353945
TU119286 lncRNA upstream 31593 11437907 ~ 11438726 (+) True G80667
TU119481 lncRNA upstream 142641 11326427 ~ 11327678 (+) True G80784
TU119508 lncRNA downstream 22518 11508000 ~ 11509053 (+) True G80808
TU119509 lncRNA downstream 25992 11511474 ~ 11511894 (+) True G80809
TU119516 lncRNA downstream 64133 11549615 ~ 11555713 (+) True G80814
TU119526 lncRNA downstream 71480 11556962 ~ 11559047 (+) True G80819
TU119535 lncRNA downstream 85620 11571102 ~ 11571431 (+) True G80825
XM_043251852.1 mRNA upstream 35795 11424607 ~ 11434524 (+) False cant1b
XM_043251851.1 mRNA upstream 35795 11426756 ~ 11434524 (+) True cant1b
XM_043251854.1 mRNA upstream 46105 11417605 ~ 11424214 (+) False afmid
XM_043251853.1 mRNA upstream 46105 11417607 ~ 11424214 (+) True afmid
XM_043252894.1 mRNA upstream 65770 11397046 ~ 11404549 (+) True syngr2b
XM_043252196.1 mRNA downstream 1034 11486516 ~ 11499922 (+) True orc2
XM_043252195.1 mRNA downstream 20171 11505653 ~ 11507717 (+) False LOC122354145
XM_043252192.1 mRNA downstream 26851 11512333 ~ 11523658 (+) True LOC122354143
XM_043251321.1 mRNA downstream 39541 11525023 ~ 11526933 (+) False rpl37a
XM_043252731.1 mRNA downstream 43237 11528719 ~ 11535114 (+) True eif4a3
TU119444 other upstream 243697 11222347 ~ 11226622 (+) True G80761
TU119245 other upstream 808349 10641132 ~ 10661970 (+) True G80638
TU119130 other upstream 999132 10466622 ~ 10471187 (+) True G80551
TU118515 other upstream 2588843 8879651 ~ 8881476 (+) False setmar
TU118487 other upstream 2651040 8818390 ~ 8819279 (+) True G80095
TU119266 other downstream 20200 11505682 ~ 11507771 (+) False LOC122354145
TU119267 other downstream 20200 11505682 ~ 11507771 (+) True LOC122354145
TU119512 other downstream 39577 11525059 ~ 11527042 (+) True rpl37a
TU119513 other downstream 43252 11528734 ~ 11529636 (+) False eif4a3
TU119538 other downstream 94544 11580026 ~ 11672938 (+) False LOC122354243

Expression Profile