RNA id: XR_006252075.1


Basic Information

Item Value
RNA id XR_006252075.1
length 1932
RNA type transcript
GC content 0.48
exon number 8
gene id LOC122353949
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 282263 ~ 288946 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAGCGCTGAATGGAACGTGTCCAGCAGTGCCCAGGTTGAACTTGGGAGGGAATGACTGTAAGGGTGAATGATAGATACATAAAGGAAGATGAGATCAGGGGCTCTGGAGACTAGGAAAGGGCTGGGCTGGGTGGAGCTTAGATCAACTGACCAGCTTCATCTATAAAAGCCACAGTCTCACATCCTGTTGTGACTCAGCTTTGATCAAAACTACTGGAGACAAAAAGACCAGACGAAGACGAAGATACAACTAGGCATATCCTTGAATAAAAGGTTTAAACAGCAATTAGAAGCAAAACCATGAGTCACTCTACATTTCGCACCTCTTATCACCGCACTTTCGGGACGCCTGTCTATAGCCCCGTGTCCAGTCGCATCGGGGGCCGCTACATCTCCTCCTCTGTTCCCACGCGCTCGGTAGACTTCAGGAGCCGCTCCAGTGCTCCGGCCCCCCGTCTCTCTTACGATAAAGTGGACTTCTCAGTGGCAGAGGCCATCAACCAGGAGTTCCTTACCACACGCAGCAATGAGAAAAGAGAACTGCAGGAACTCAATGACCGCTTTGCCAGCTTCATAGAGAAGGTCCGGTATTTAGAGCAGCAGAACTCAAAGCTGATTGTGGAGCTGGATCAGTACAAGGACCAGCAGCAGGGGCCATCAGGCCGCATCAATGAGCTGTGCCAGCAGGAGATGAGAGAGATGCGCAGACAGCTGGAGCTGATGGGCAAAGATCGAGACCAGATGCAGGTGGAGAGAGACAACCTGGCCGAAGATGTGGCCCTGCTCAAACAGAGGTTAAATGAGGAGATGCAGAAAAGACAGGAAGCTGAGAATAATTTGACTCTGTTTCGTAAGGATGTGGATGATGCTACACTCGCTCGACTGGAGCTGGAGAGAAAGATTGAGTCTCTGATGGACGAGATCGAGTTCCTCAAGAAGATGCATGATGAGGAGATTCAAGACGTGCAGGTGAGTGTTCAGAGTCAGCAGATGAAGATGGAGGTGATGGAGACGTCCAGCCGGCCTGATCTGACAGCGGCACTTCGAGACATCCGGGCTCAGTATGAGAGCATCGCCACCAAAAACATGCAGGAGTCCGAGGAGTGGTACAAGTCCAAGTTTGCTGACCTGACTGATTCGGCGAAGCGCAACGCTGAGGCCGTGAGGCAGGCTAAACAAGAGACCAATGACCTGAGGAGGCAAATTCAAGCCCAGAACTGCGATATCGATGCTCTCAAAAGCACTAACGAGGCTCTGCAGAGGCAGATGAGAGAAATGGAAGAGCAGTTTGCAGCAGAGGCCGGAAACTATCAAGACACCGTGTCCCGTCTGGAAGAAGAGATACGGCACCTGAAGGAGGAGATGTCACGCCACCTGCGGGAGTACCAGGATCTGCTCAACGTTAAGATGGCCCTAGATATTGAGATCGCCACCTACAGGAAACTTCTGGAGGGAGAGGAAAACCGATTACGGTCAGTTTTCTGATACTGGACCTGGAAAGAAAGTCGTAATCAAGACTGTTGAGATTCGTGATGGAGAGGTGGTGAAAGAATCCACAAAGGAGAAGGGCAGAGACGAGAAAAAAGACGGCCAAGGACAAGCTGACAAAGATTAGAGAGTGCAGATAAATGAATGCTGGATGAGTTATTGTGTGTTGCAGTTTTAATGCGAGTGTAATGGCACACATGCCGTTTACGACGATGCTTGTAGTGTAGTGAATAAGCAAATGTGACTCACTGTTGTGTACAATATGGTgctattaatataatatcagCGTAACATGACAACGCCTTAACTAACAAATCAAGTATGCAGGCCTAAATAAAGTCAGTAACAAGATGCCCAAGAAACGATCACTTacagacaacaaaaacaataattcagAAGTTCATGTCAATGTAATCTTCAAATAAAAGTGAACGGAAATGGAA

Function

GO:

id name namespace
GO:0042246 tissue regeneration biological_process
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115652 lncRNA downstream 9299 271740 ~ 272964 (-) True G78150
TU115651 lncRNA downstream 10906 270980 ~ 271357 (-) True G78149
TU115633 lncRNA downstream 44364 237488 ~ 237899 (-) True G78140
TU115567 lncRNA downstream 213994 67765 ~ 68269 (-) True G78109
TU115559 lncRNA downstream 217122 63074 ~ 65141 (-) True G78106
TU115623 lncRNA upstream 35252 324198 ~ 324956 (-) False LOC122354324
TU115663 lncRNA upstream 114187 403133 ~ 404980 (-) False LOC122353669
TU115664 lncRNA upstream 114300 403246 ~ 404980 (-) False LOC122353669
TU115670 lncRNA upstream 142048 430994 ~ 431422 (-) True G78162
TU115673 lncRNA upstream 142741 431687 ~ 438660 (-) True G78164
XM_043252496.1 mRNA downstream 1696 274866 ~ 280567 (-) True LOC122354323
XM_043251862.1 mRNA downstream 56432 217174 ~ 225831 (-) True LOC122353952
XM_043251861.1 mRNA downstream 95412 179559 ~ 186851 (-) True LOC122353951
XM_043251532.1 mRNA downstream 274473 5676 ~ 7790 (-) True LOC122353658
XM_043251864.1 mRNA upstream 1034 289980 ~ 290350 (-) True LOC122353956
XM_043252497.1 mRNA upstream 33267 322213 ~ 329039 (-) True LOC122354324
XM_043252498.1 mRNA upstream 50149 339095 ~ 346418 (-) True cdk4
XM_043252492.1 mRNA upstream 78900 367846 ~ 372472 (-) True tegt
XM_043251510.1 mRNA upstream 85214 374160 ~ 385324 (-) True avil
TU115653 other downstream 1686 279995 ~ 280577 (-) False LOC122354323
TU115630 other downstream 56451 218386 ~ 225812 (-) False LOC122353952
TU115639 other upstream 154939 443885 ~ 448901 (-) False G78144
TU115640 other upstream 154939 443885 ~ 448901 (-) False G78144
TU115643 other upstream 154939 443885 ~ 448901 (-) False G78144
TU115685 other upstream 164188 453134 ~ 455998 (-) True G78170
TU115720 other upstream 410997 699943 ~ 775965 (-) False G78195

Expression Profile