RNA id: XM_043251957.1


Basic Information

Item Value
RNA id XM_043251957.1
length 3329
RNA type mRNA
GC content 0.52
exon number 15
gene id mybl2b
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1277780 ~ 1284953 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGCTATTTTAAAACGGGCTTTCGCTTTAGGACACATCGGGGTCACACCTGACGCTTTAAACATAACGCCTGGGTTTACAGACATTGCTGACTTTTAAGTTTTTTGAGTATTGCATCGAACCCCGcctaacataaaaaaacaaaagagggcTGAAACTCGCGGGACCCGTTCAGTTTAAACGCTATGAAGACGAATTTAACAGACACTCCGTGTTTACAATGTTATTAACTGATCCAAATAATTCCCATGCGATGCTAACCTCATTTTTACGCGTTTTAACACTTGTTGATGACATGCACTGAAACAATTAGCCAGGTATGCTAGTAGATCGAAGTAACGTTGCTCTAACTTACCAAACACAGCCTTACAAAACTCCAGAGTCTGGAGTGATTGACTTAACCATCATATCGTTAAACAAAGCCGGGTTTTTCATCTACTTCTGATGCTAGTTGTCTGcgaggatgaggaagaggcCTTGTGTCAGGACACGGACTCCGATGTGGCCGATCAGAAGGATTGTGGGAAAGTCAAAGTCAAGTGGGCCCAAGACGAGgATGATAAGCTGCGCAAGTTGGTGCTGAACGTCGGGCCGAATGACTGGAAGTACATCGCTGGCTTTTTACCTAATCGGTCGGAGCATCAGTGTCAGCATCGCTGGTTCAAGGTTTTGGATCCTGATCTAGTCAAAGGACCCTGGACAAAGGAGGAGGACGAGAAGgtgATTGAGCTCGTGAAGAAGTACGGCAACAAGCAGTGGGCGATGGTGGCCAAGCACCTGAAGGGCCGTCTCGGGAAGCAGTGCAGAGAGCGCTGGCACAACCACCTCAATCCAGACGTCAAGAAGTCGTCCTGGACTCCGGAGGAGGACCTCGTCATCTACAAGGCTCACTGCGTGCTGGGCAACCGCTGGGCTGAGATCGCCAAGCTGCTTCCTGGAAGAACGGACAATGCTGTGAAAAACCACTGGAACTCCACTATCAAGCGTAAAGTGGAGACGGGTTACTACTCGGACGTGGAGCCCACGCTTCACACGCTGCAGCCGACGGAGAGCGCTCAGGTGGAGATCTGTTTCGATGGAGCCGGCGAGGGTTTACCGGGAGAGGTCCTGAAGACGGATCCGGATGCTCACGACAAGGTCCCCTCCGCTCCACACAAAACGGCGTCCCCCAAGACCCCGAAGGCTCCGGCGACCCCCAAAAGTGAAGCGGGGGACTCGAGCGTGTCCACGTGGGTGATGGACAGCTCCGGCTTCCTGTCGCCCTCGGCGGCCCCCACGCTGAAGGAGGTGATGGAGCTGATGGACGGGGATCTGGAGGGCTGGTGTACGATGTCAGACTTCGAGCTGCCGGAGGAGAGCCAGAGCTCGGAGCTGCTGCAGTTTCGTCTGGAGGGCAGCACCCTGCAGGAGCTCAGCAAGGGCAGCAAAGGAGAGCTGATCCCCATCTCCCCCGGCGGGGCGACCCCTCCGTCCATCCTGAGCCGCCGCAGCCGCCGCCGCATCGCCCTGTCCCCCGACCCCAATGACTCCATGACGCCCAAGAGCACGCCCGTCAAAATCCTGCCCTTCTCTCCCTCACAGTTCCTCAACATGTGGACCAAGCAGGACACGCTGGACCTGGAGAACCCGTCTCTGACGTCGACCCCCGTTTGCAGTCAGAAGGCCATCGTCACCACACCCCTGCACCGCGACAAAACCCCGCTCACGCAGAAGGAGAACTCTCTGTTTATCACGCCTAATCACAAATCCGACCTGGACACGACCCCCCGGACCCCGACTCCGTTCAAAAACGCCTTGGAGAAGTACGGCCCTCTGCGGCCCCTGCCTCAGACTCCGAATCTGGAGGAAGACCTTAAAGAAGTGTTGCGCAGCGAGGCGGGGATTGAGCTGATCGTAGAAGACGAAACTCCTACGGAGAAGAAACGCAAACAAGTGTACCGGCCGCCGATGAAGAAGGTGCGCAAGTCTCTGGCTCTGGATGTCATTGACTGCAGCGAGAGCGTTGCTGCGCGGAAGCAGCAGATTAAACACGCCGTCAAAACCACTCCCAAGGCTCTAATCGCCCGGTCGCTGCCTCTTGTGACGTCTTGTGATGTGAAAAAGGAAGAGAATGTGCTGGATCAAGGATTTATTCTCGGCCCGAATGAGAGCGGGCCGCCCGCTAAACCTGTGCCCCCCACACTGAAACAGAGTCCTCCCTTACCTATGTCTCCAGCCTGGGAAACGGTGGTCTGTGGACGGACGAAAGACCAGCTGATCATGACGGAGAAAGCCAGGCGGTACCTCCGCTCTTTAAAGTGTCACGCCCCGAGCCGAGCGCTCATACTCTCCTGATCCCAGCGCAGCGTCTGCACGCTTTTCTACAAAGCATAATGTGtcaaatttgttcatttaacaaaaaatctaaatgtcaTGTAGAATATGAAAACGATTACTGTTCCGGAATAGACACTTTAACGCCGATAATGCTCTGTTTTCTGTGGCATGCTAGCACAGTCAGGATAGCGCCTGActtcatgtgaccctgtatgaTAAGTGCGTcgctcttttgttttatttatgtattgtccACCTGTTTTTGAACGATCTGCGTCTCTCTAAGGATCACTAGACTCATGTGATGTACAGGCTGTGTATTAAAAGACAAAGGTTGGCTATGTTCCTGGCTGGAGGTCGATCTTGACGTTCAGCGAAGCAGCGTGCGAGACCTCAGCTCAAGGCATTCATTCAGTGtgcatagtttttgtttttttagggcAGAAAAGCCTTTGGTATATGCTATAAGAACAATAAACAGCCGCCACAGACCGTGCTTTTCTGTGTAAGGAGCATGTTCAAAAATAATCCGAAAATTTCAGGAGTTGtggaattatttattacttCGGTGAACGCTGTACGTCGCTCGCTGTTTTCTTCTGCTGGCTGTGTAGTGTGCATCACTGAGGTTGTGACACGCTGCAGTTTTTACATGGAGGGAAGGTTTTATGTGGGGTTGCGTTGGATGAGTTTCTCCCAGAGTTTCAGTGGACTTCCCGAAAGGACAGATCTGCTCTTTTTCTAATTATTGATGTTCTTACTACATAAATACTGCTGCTTGTGATTAAAACGCAGAAGCCAGCGTCTTTCAGGATGTGTCTCCCGTCCGTTGGGCTGAAGGTTATCTCTTGGTTACGTGAGTTGCTCAGTCTGTCCGGATCTAATGAATCGCATAACTTCTGTCTGCTGAAATGTTTTGTCTGCCCTACTTAGATTTGTCAATATATGCGACGAATGTAATCGTGTGAGCTCTTTAATTGTACCGCACAAAAAATACAGGCCTTCTCCAATGA

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K21769 MYBL2, B-MYB; myb-related protein B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116026 lncRNA upstream 897 1276515 ~ 1277127 (+) True G78400
TU115991 lncRNA upstream 55189 1217224 ~ 1222835 (+) True G78380
TU115972 lncRNA upstream 82561 1195224 ~ 1195463 (+) True G78370
XR_006252047.1 lncRNA upstream 203444 1071074 ~ 1074580 (+) True LOC122353680
TU115811 lncRNA upstream 237814 1034532 ~ 1040210 (+) False tsen2
TU116101 lncRNA downstream 135391 1420344 ~ 1421787 (+) False rbms2a
TU116102 lncRNA downstream 137780 1422733 ~ 1425764 (+) True G78455
TU116118 lncRNA downstream 184715 1469668 ~ 1471384 (+) True G78467
TU116121 lncRNA downstream 194221 1479174 ~ 1482149 (+) True G78468
TU116134 lncRNA downstream 228926 1513879 ~ 1514178 (+) True G78479
XM_043251958.1 mRNA upstream 2011 1270083 ~ 1276013 (+) True ift52
XM_043251561.1 mRNA upstream 8428 1264285 ~ 1269596 (+) True srsf6b
XM_043251564.1 mRNA upstream 13797 1260783 ~ 1264227 (+) False acot8
XM_043251563.1 mRNA upstream 13797 1260807 ~ 1264227 (+) True acot8
XM_043251324.1 mRNA upstream 64479 1211847 ~ 1213545 (+) True ppp1r3db
XM_043251955.1 mRNA downstream 157 1285110 ~ 1290204 (+) True dtx3l2.2
XM_043252344.1 mRNA downstream 6154 1291107 ~ 1300799 (+) False LOC122354215
XM_043252343.1 mRNA downstream 6155 1291108 ~ 1300799 (+) True LOC122354215
XM_043252346.1 mRNA downstream 6155 1291108 ~ 1300799 (+) False LOC122354215
XM_043252345.1 mRNA downstream 6155 1291108 ~ 1300799 (+) False LOC122354215
TU115960 other upstream 86303 1186866 ~ 1191721 (+) True LOC122353696
TU115925 other upstream 200625 1074744 ~ 1077399 (+) False cnbpb
TU115926 other upstream 200625 1074744 ~ 1077399 (+) False cnbpb
XR_006252083.1 other upstream 571474 603138 ~ 706550 (+) False atp2b2
TU115544 other upstream 682696 591328 ~ 595328 (+) False iars1
TU116128 other downstream 200754 1485707 ~ 1510874 (+) False rargb
TU116164 other downstream 305791 1590744 ~ 1593125 (+) True G78500
TU116178 other downstream 359678 1644631 ~ 1726097 (+) True G78506
TU116166 other downstream 393284 1678237 ~ 1680177 (+) False nabp2
unassigned_transcript_1592 other downstream 575344 1860297 ~ 1860368 (+) True trnaq-uug_15

Expression Profile