RNA id: XM_043252003.1


Basic Information

Item Value
RNA id XM_043252003.1
length 3433
RNA type mRNA
GC content 0.46
exon number 15
gene id dnajc16l
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3244829 ~ 3253849 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGTGTTTACCCACAATCCCTAACTTCCGGAAGTACCAGGCAGGGAAAGGCCGGGGATACGGTCCACCCATTACCATCGGGAGAACATGGATTGCTGctaaattgtgaatatatacGATTACAGCGAGCGTCGTGCCTAGCCTGTCAGTTCGCGTAGCACGAAGATGGGAGGCTGGAGCGCGTTCGTGACCTGCTGTGTTTGGGCGATTCTTCTCCTGGCTCTGTTCGGAGATTCGCTGGCATCATCGCCCGAGTTCGATCCCTACAAGGTTCTCAGAGTGTCCAGACATGCCAGCCAGGCCGAAATCAAGAAAGTCTACAAGAAGCTCGCGAGAGAATGgcatccagacaaaaacaaaagtccaGGGGCAGAGGACATGTTTATCAAGGTCACTAAATCATATGAGATTCTTTCTAATGAGGAGAGAAGGGCGAACTATGACCGGTTTGGACAAATGGACGAGAATCAAAACTTCGCCCGAGCACCGCAGGGCTTCAGACATTATCATGACAGCTTTTACTTCGATGAGTCGTTCTTTCACTTCCCTCGGACGAGTCGGGATTTCACAGACAGCAAGCACCTCCTTCAATACAACCAATATATCAACGAGGTGCTGCCGGACAGTTTCAAGAGACCCTACCTGATCAAGATCACGTCGGAGTGGTGCTTCACCTGTATCCATATCGAGCCTGTTTGGAAGGACACTGTGCAAGAGCTGGAGCCATTGGGAGTTGGTATTGGTGTGGTGGACATTGGATATGAGAGACAGCTGGCGAACCATCTCGGTGCCCACCGCACACCATCCATACTAGGTTTAATCAATGGCAAAGTCACTTTCTTCCACTACGCTGTGGTCAGGGAACACTTGAGACAATTTGTGGAAAGCCTTCTGCCTCAGAAGCTGGTTGAGAAGGTGACAGATAGCAGCTACCTCGAGTTTTTAAACAGTTGGCATGAGGAGAATAAACCAAGAGTGCTAATGTTTGATGTAGCATCTAATATCCCTCTTTTGTATAAGCTCACCGCGTTTGCCTATAAAGACTATGTACGGTTTGGCTATGTGGACATGGGCCTGACTGAGACCTCCAAAGTCGTGCAGAGGTTTAACATCAACACATACGCTCCCACCATGCTTCTGTTCAAAGAGAACACAGAAAAACCAGCTGATGTTATACAGGCAAGAGGAATGAAAAAGCAGATAATCGACGAGTTTGTGTCCAATAACCGTTTCCTGCTGGTGCCGCGGCTGGTGAATCAGAAACTCTTCGACGAGCTGTGTCCAGTTAAACAGTTCCACCGTCGCAGGAAGTACTGTGTTCTTCTCGTTACTGGTGAAGGGGAGCAGTTTGTGTCCGTGAATGAGGCCTTCTTTGACTTTGCGTCTTCCAACACTAAAGAAGTTCTCAGGTTCGCTTATGTTTATCAAAGGCAGCAGCAGCCTCTCTGTGACACCCTGCTCAAAAAAGAAGACACAACCCCTCCACAGGTGATTCTCCTGGAGAGACGCAGTGCTACAGGAAGGGTGTTGTATCGGACAGTGACAGGTGGATGGAATGGGAGTGACGATGATAAGCACCGCCTCCACGAGCAGCTTGAGATTCTGCAAAGAGACCCCTCCTACCTTACCCATGATGCCATGCTGCCCGAACTCAACAATGAGTTTGCCTCCatgTTTCTGATTCAGTGGATAAATACTGCATATGATTACGTCGCTCAATTTTACTTTGATCTTCTATACTCTAACTGGCGTGAGATGATGCCTGTACTGTCTCTGATCTTCTCCGCTCTTTTCATCCTGTTTGGGACTGTAATCATTCAGGCCTTCAGTGACGCTGGGGAAGATAAACCAGCCAAACAAAAGGCCGCTGATCCACCAAAGACAGCAGAAAGCTCTCCAGGACAAGAAAGTACTTCAAGTCGTCCACCGAAGAAGAATTTTGTGGAGGTGACGGAGCTGACGGACATCACCTACATGAGTAACCTAGTCAGGTTAAAGCCTGGTCACATCAACGTCGTGCTGATCCTAACTGATGTTTCTAAGCAAGTACTGCTCAGAAAGTTTGCCAAAGAAGTGTATTCGTTCTCAGGATCTCAGACTCTTCACTACTCCTTTTTAAATGTGGACAAGCACAGCCAATGGATGGATTCCCTCATGGAGTCGGCTCCTGAAGCCAGACCGTCAGACTGCTTGGAAAACGAGGAGGACTCCACCTCCAACAAATCAGACTACACTGGCCACGTCCTGGCCCTCAACGGCCACAAGAAATACTTCTGCATATTCAGACCCGTCTTCACAGGGGAAGAAGCCGAAAGTAGTAGGTGGTCCGACGAGGATGCTGGTTCAAGCAAAGCCTCGAGGTCCCGATCAAGTTCCCGACAGAAGGCCACCACTCTGGAGATCCACCACAAACTGGACCGACTGGGATTGTGGATGGAGAGGCTTATGGAGGGAACTCTACCACGGCACTATGTTCCGGCCTGGCCCGGTCTGGACACCATAACGCCACAGAAATAATAATCGCCTTTGTCCTCAGGCACACACTGCAGTAGTGACGTGAAAAGTGTTGAGCTCTCAACATCTTTTCGATCCAAATTACTTTGTTACTTAAAAAGATAttaatttattctgtaaaaCGCACTGGTGATTAGTAGAGGTTTTCGTTATTTAGAGCACCATGTGCTCGTCGGCTGCTTTAGGGGCAAAACTCTTTTCAAGCTGTAACGGTAcactgtcatttttgtttgtatggtttaatttttgtatGGATGCCAGTACCCAGATAAAGCCTCTCTGTGTAGCTTCCGACAGGGCTATCGTGTCTTTACACTGCTGGGTATGTGGCAGCTAAATCCCACCCTTAGAATTTCATCCTTGGTCATTGGAATTCAAGCAACAGGCCAGATTTCAGAAGCAGCTCGTATTAAGATTACCGTTCTGCCTTTTTTTCCAGTCAGAGTCACTATGTGGATGATAGAAATTTGAAAAAGAGagtgcgctgtgtgtgtgtgactgcgtGCGTGCAGGTTTATTCATCTTCTCTCCTTATGCAAAGTCTTCAAATACAAATTTACTAAACAGTGCTGCATGAAGAATCACGTTTTGGAGACTAGAGGAGATACTTAGATTTTACTGCCATCGGTGCATGTGCTGCCTTTCCTTAAAGCCCGTACTTTCTTTAACGCCATATGTTTCATGTTTTGCACTTTGACAACTTgcttaggattctttgattcataaatgtaatatttaaatagaggTTCTAACTGCATTTGAATTATCACTATAACTTAAGGTTAAGAATTTTAAGAACGTCTCTAGATCATCAGTTGGCATTTTCTTTCAGGAAAATGACCTTATTTTTgtgttgcacttttttttcGTGGTTGGTTTATATgtgcattgtttaaaaataataaagtttgtACTGTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116652 lncRNA upstream 128399 3115425 ~ 3116430 (+) True G78815
TU116630 lncRNA upstream 241838 3001119 ~ 3002991 (+) True G78797
TU116609 lncRNA upstream 431547 2812377 ~ 2813282 (+) True G78784
TU116594 lncRNA upstream 544126 2700395 ~ 2700703 (+) True G78772
TU116577 lncRNA upstream 756276 2488214 ~ 2488553 (+) True G78757
TU116746 lncRNA downstream 34352 3288201 ~ 3291400 (+) True G78886
TU116758 lncRNA downstream 132432 3386281 ~ 3391193 (+) False tmem167b
TU116759 lncRNA downstream 137715 3391564 ~ 3391790 (+) True G78898
TU116921 lncRNA downstream 286139 3539988 ~ 3541069 (+) True G79002
TU116950 lncRNA downstream 447896 3701745 ~ 3702033 (+) True G79021
XM_043252001.1 mRNA upstream 3570 3225810 ~ 3241259 (+) True itih3a.1
XM_043252002.1 mRNA upstream 19211 3212989 ~ 3225618 (+) True itih3a.2
XM_043252590.1 mRNA upstream 130809 3104149 ~ 3114020 (+) False gata2a
XM_043252513.1 mRNA downstream 9780 3263629 ~ 3267276 (+) True si:dkey-33m11.7
XM_043252010.1 mRNA downstream 16972 3270821 ~ 3272610 (+) False camk2n1
XM_043252005.1 mRNA downstream 24952 3278801 ~ 3285540 (+) True ddx19b
XM_043252380.1 mRNA downstream 46534 3300383 ~ 3352012 (+) False acap3b
XM_043252381.1 mRNA downstream 46535 3300384 ~ 3356156 (+) True acap3b
TU116622 other upstream 418035 2825539 ~ 2826794 (+) True G78790
TU116585 other upstream 564687 2678135 ~ 2680142 (+) True G78763
XR_006252148.1 other upstream 1366702 1878021 ~ 1878127 (+) True LOC122354697
unassigned_transcript_1620 other upstream 1367915 1876831 ~ 1876914 (+) True trnas-gcu_27
unassigned_transcript_1619 other upstream 1368140 1876619 ~ 1876689 (+) True trnap-agg_19
TU116720 other downstream 16350 3270199 ~ 3272619 (+) False camk2n1
TU116721 other downstream 16834 3270683 ~ 3272619 (+) True camk2n1
TU116739 other downstream 104410 3358259 ~ 3361290 (+) True LOC122353713
XR_006252154.1 other downstream 492801 3746650 ~ 3746742 (+) True LOC122354703
XR_006252155.1 other downstream 493078 3746927 ~ 3747012 (+) True LOC122354704

Expression Profile