RNA id: TCONS_00011022


Basic Information

Item Value
RNA id TCONS_00011022
length 429
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_004956
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 45364674 ~ 45368690 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTGGTGTGCTCTGTGGAAAACTGGGATGGCTGTAATGCCATATGAACACTTGGTAATGAACGAGCGACacattagagcagggCTGCATATATGCtgatcaaaaatatatttaacacaATATTTCACAGAAATAACGGTGAACTCATACCATTTAAAAGCTCATAACCAGTCATTGTTCAGCAGTTTAAGGTCTAACAGAGACTCATGTATTCAGATGAAGCTGATCTTTCAGGAGCACCTTAAGAACATTCATCGCTTTCATGGTGATATtacacattttctgtttaattgtcATCGTCCTTCTGTGCGACGACCTGAAATGTCTTTTCCTGACATGCATCACGATGCTTTTTGTAAATGATAGTGATGGTCAatatgatgatgaggatgaagatgatgaagcaGCCCACACCTGCAGAGATGGCAGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011021 lncRNA upstream 1672827 43688204 ~ 43691847 (+) True XLOC_004949
TCONS_00011020 lncRNA upstream 1889134 43376486 ~ 43475540 (+) True XLOC_004947
TCONS_00010771 lncRNA upstream 2213553 43138356 ~ 43151121 (+) True XLOC_004946
TCONS_00009699 lncRNA upstream 2225919 43108661 ~ 43138755 (+) False XLOC_004946
TCONS_00010770 lncRNA upstream 2225921 43107741 ~ 43138753 (+) False XLOC_004946
TCONS_00011023 lncRNA downstream 322122 45690812 ~ 45699982 (+) False XLOC_004958
TCONS_00011024 lncRNA downstream 322144 45690834 ~ 45699982 (+) True XLOC_004958
TCONS_00011025 lncRNA downstream 338501 45707191 ~ 45728541 (+) True XLOC_004959
TCONS_00011026 lncRNA downstream 515099 45883789 ~ 45921399 (+) False XLOC_004960
TCONS_00011027 lncRNA downstream 515304 45883994 ~ 45958520 (+) False XLOC_004960
TCONS_00009707 mRNA upstream 107463 45238292 ~ 45257211 (+) True XLOC_004955
TCONS_00009706 mRNA upstream 146196 45200744 ~ 45218478 (+) True XLOC_004954
TCONS_00009705 mRNA upstream 175566 45150709 ~ 45189108 (+) True XLOC_004953
TCONS_00009704 mRNA upstream 244502 45060789 ~ 45120172 (+) True XLOC_004952
TCONS_00009702 mRNA upstream 708262 44610912 ~ 44656412 (+) True XLOC_004950
TCONS_00009708 mRNA downstream 307977 45676667 ~ 45688953 (+) False XLOC_004957
TCONS_00009709 mRNA downstream 308603 45677293 ~ 45687087 (+) False XLOC_004957
TCONS_00009710 mRNA downstream 308603 45677293 ~ 45688595 (+) True XLOC_004957
TCONS_00009714 mRNA downstream 1018293 46386983 ~ 46391264 (+) True XLOC_004964
TCONS_00009715 mRNA downstream 1035617 46404307 ~ 46408636 (+) True XLOC_004965
TCONS_00009703 other upstream 737667 44626890 ~ 44627007 (+) True XLOC_004951
TCONS_00009686 other upstream 3904040 41460518 ~ 41460634 (+) True XLOC_004935
TCONS_00009675 other upstream 4952992 40411566 ~ 40411682 (+) True XLOC_004927
TCONS_00009671 other upstream 5860996 39503564 ~ 39503678 (+) True XLOC_004924
TCONS_00009670 other upstream 5934357 39430202 ~ 39430317 (+) True XLOC_004923
TCONS_00009724 other downstream 1234751 46603441 ~ 46603555 (+) True XLOC_004973
TCONS_00009746 other downstream 1515154 46883844 ~ 46937955 (+) False XLOC_004982
TCONS_00009747 other downstream 1546681 46915371 ~ 46937946 (+) True XLOC_004982
TCONS_00009795 other downstream 3447470 48816160 ~ 48825502 (+) False XLOC_005016