RNA id: TCONS_00009708


Basic Information

Item Value
RNA id TCONS_00009708
length 1780
RNA type mRNA
GC content 0.40
exon number 6
gene id XLOC_004957
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 45676667 ~ 45688953 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attttgtcctCTGTGTACTGTATGCTACATTTTTGTAGCTGCCATTAATCTCTACAGAATGTCCGGCAAATCTGTTAGCCTTATTAAATTATGTTTGAGTAAGATATCGACCACATGAACAAATACTATAGTGTTAGTAATTTGATAGTGATTTGAGTTGTAATACCACAACTAATGCAACCAAATTACCCAATATTGTACTTATAATACAGCTATACATTATACTAatatacaccacagtttactgtagtaaaagtaTACTATTTATTACAGTTGATCAGTTCACAAATATTATAGTATGATGTATATTCTATGTGTAAAGTGAAAGGTTGCATAATATACTTTAAAGTTGATTAGTAGATGAAATTGTGCTagttaacaagcaaaaaaaaaagtaaataaatcaaacattctGTTGACGGATGACGCAGTTACCTGTCCATTGAAATGAGGACAGTCACATGACTGTCAGGATCAGCGAGGCTTTACAAACctgcaacaaaaaaacaaaaaactaatctaAAGAAGAGCATGTCAGAAACAATGGAGTCAGTGATGCAGAAGCTCTGCTGAGCCAGAGATACAGAGCAGTGAATGAAACGCAGCTGAGAGACACTGGTTACTGCATACAGCCGCTCTgatacacacagacactcacaatCTACAGCTAATATGGCTGCAAATTCAGTGTATGATTTCACTGTGGAGACCCTGGAGGAAAAAAGCGTCTCGCTCGACATCTTCAGAGGAAAAGTTCTGCTCATCATGAACGTGGCCACCTTCTGAGGGTCCACCATTGAAGAGTATCACAGGATGAATGCACTCATGGACATGTATGGAGGACAGCGCTTCACTGTACTTGGTTTCCCCTGCAATCAGTTTGGACTTCAGTCTCCTGAGGAGAACCATGAAACCCTGAATGTTCTGCAGCATGTGAGACCAGGATCTGGTTTCCTTCCAAAGTTCCCCATTTTCAGCAGGATTGAGGTGAACGGCTCTGATGAAGATCCTCTGTACGCTTACCTGAAGGAAAGTCTTCCGTTTGTCAATCCTGTCATTGGAGACATCAGGAAACTCTACTGGTCTCCCATTAAAGCCAATGATGTCCGCTGGAACTTTGAGAAGTTTCTCATCACCGCAGACGGACGTCCTTACAAACGGTATGATCGTAATTGTCCGTTTGAAGATGTGGAGCGGGACGTTTCTGCACTTCTGCAGGGAAGACATGcattataaaacataatatTGACGATCCCTCAGGAAACTCCGTCCGGCAGCTGAGAGGATCTGATGGGGACGAGTGGATCTGATCTTCAGTGCATTCAGTCAGATCTGCAGACCCGAGACGcccaagaaacacacacacactgcacaacaCTGATCATGTTTCCCACAATAAAGAGCATTCTGCACTACAACACATGTACTCCTATTTATTTACATGCTGATCAATGTTCAATAATATTAAACACAAGCTTTAAAAAACAACTGAAACTAAAACCTAGTTTGTTTGAATTTGATGTATCTTCACCTTTTATCTGATGTATCGCAATAtttctaacattaaaaaaatgtaaataaaaaatactatttattttcaaAGAGTCATGATaacccccactttcggttcaggtctacctcagaattattttcaaaagatgcatcataatgggcgtggagctctgtaagcaaagggcaggagtgggcgtggccagcaggggagaaggaggggagtgaacaactgttgtcagttagcgtgaggagatgcatgattttatag

Function

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0004601 peroxidase activity molecular_function
GO:0004602 glutathione peroxidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130603-13 Predicted to enable glutathione peroxidase activity. Predicted to act upstream of or within response to oxidative stress. Orthologous to human GPX5 (glutathione peroxidase 5) and GPX6 (glutathione peroxidase 6).

Ensembl:

ensembl_id ENSDART00000016553

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011022 lncRNA upstream 307977 45364674 ~ 45368690 (+) True XLOC_004956
TCONS_00011021 lncRNA upstream 1984820 43688204 ~ 43691847 (+) True XLOC_004949
TCONS_00011020 lncRNA upstream 2201127 43376486 ~ 43475540 (+) True XLOC_004947
TCONS_00010771 lncRNA upstream 2525546 43138356 ~ 43151121 (+) True XLOC_004946
TCONS_00009699 lncRNA upstream 2537912 43108661 ~ 43138755 (+) False XLOC_004946
TCONS_00011023 lncRNA downstream 1859 45690812 ~ 45699982 (+) False XLOC_004958
TCONS_00011024 lncRNA downstream 1881 45690834 ~ 45699982 (+) True XLOC_004958
TCONS_00011025 lncRNA downstream 18238 45707191 ~ 45728541 (+) True XLOC_004959
TCONS_00011026 lncRNA downstream 194836 45883789 ~ 45921399 (+) False XLOC_004960
TCONS_00011027 lncRNA downstream 195041 45883994 ~ 45958520 (+) False XLOC_004960
TCONS_00009707 mRNA upstream 419456 45238292 ~ 45257211 (+) True XLOC_004955
TCONS_00009706 mRNA upstream 458189 45200744 ~ 45218478 (+) True XLOC_004954
TCONS_00009705 mRNA upstream 487559 45150709 ~ 45189108 (+) True XLOC_004953
TCONS_00009704 mRNA upstream 556495 45060789 ~ 45120172 (+) True XLOC_004952
TCONS_00009702 mRNA upstream 1020255 44610912 ~ 44656412 (+) True XLOC_004950
TCONS_00009714 mRNA downstream 698030 46386983 ~ 46391264 (+) True XLOC_004964
TCONS_00009715 mRNA downstream 715354 46404307 ~ 46408636 (+) True XLOC_004965
TCONS_00009716 mRNA downstream 736847 46425800 ~ 46447830 (+) False XLOC_004966
TCONS_00009717 mRNA downstream 754524 46443477 ~ 46447830 (+) True XLOC_004966
TCONS_00009718 mRNA downstream 773137 46462090 ~ 46466474 (+) True XLOC_004967
TCONS_00009703 other upstream 1049660 44626890 ~ 44627007 (+) True XLOC_004951
TCONS_00009686 other upstream 4216033 41460518 ~ 41460634 (+) True XLOC_004935
TCONS_00009675 other upstream 5264985 40411566 ~ 40411682 (+) True XLOC_004927
TCONS_00009671 other upstream 6172989 39503564 ~ 39503678 (+) True XLOC_004924
TCONS_00009670 other upstream 6246350 39430202 ~ 39430317 (+) True XLOC_004923
TCONS_00009724 other downstream 914488 46603441 ~ 46603555 (+) True XLOC_004973
TCONS_00009746 other downstream 1194891 46883844 ~ 46937955 (+) False XLOC_004982
TCONS_00009747 other downstream 1226418 46915371 ~ 46937946 (+) True XLOC_004982
TCONS_00009795 other downstream 3127207 48816160 ~ 48825502 (+) False XLOC_005016

Expression Profile

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