RNA id: XM_043252192.1


Basic Information

Item Value
RNA id XM_043252192.1
length 2142
RNA type mRNA
GC content 0.52
exon number 17
gene id LOC122354143
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11512333 ~ 11523658 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttaatataatgtgcAGCTGTTTCACTCTTTAATATCTTTCATGTTTATTCTTTACTGTGTTCGTCTGTCTTCAGTCATCAGAGGACGTTTGTTCTGGAGGTGATGGGGCGTCACTGCGGGTACCTGGCGGTGGTCTCTGCTCTGGCGTCGGGAGCAGACTGGCTCTTCATCCCCGAGGCTCCTCCGGAGGACGGCTGGGAGGATCACATGTGTGCTCGACTCGGAGAGagcCGCAGTAAAGGCTCTCGTCTGAACATCGTGATCATCGCAGAAGGAGCCATCGACAAACACGGCCAGCTGATCTCCTCCAACTACGTGAAAGACctGGTGGTTCAGCGGTTGGGTTACGACACGCGGGTCACCGTCCTGGGTCACGTTCAACGAGGAGGAACGCCGTCTGCCTTTGATCGCGTTCTGagcAGTAAGATGGGTGTGGAGGCGGTGGTGGCTCTGCTGGAGGCGACCCCTGAGACCCCGGCCTGTGTGATCGGTCTCTCTGGGAATCAGGCCATGCGTCTGCCGCTCATGGAGTGTGTGAACATGacGAAAGAGGTTCAGAAAGCTATGAACGAGAAGAGGTTTGAGGAGGCCATCCAGCTGCGTGGAAAGAGTTTTGAGAACAACTGGAACACGTACAAGCTGTTAGCTCACCAGAAGCCAGCTCTGTCCAAGAGCAATCACTCGATGGCGATCCTGAACGTGGGTGCTCCGGCCGCAGGGATGAACGCCGCTGTGAGGTCCGCGGTTCGAGTCGGGCTCGCTCAGGGTCACAGGGTCTACACGGTCCACGACGGCTTCGAGGGTCTGGCCAAAGATGCGGTGGCTGAGGTTCACTGGCATGATGTGGCTGGATGGACGGGGCAGGGAGGATCACTGCTGGGCACCAAACGaaCTCTTCCAAACTCCTGCATGGAGAACATTGTCACCAATATCGGAAAATACAACATCCAGTCACTGCTGGTGATTGGTGGATTTgagGCGTATGAAGGAGTTCTTCAGCTGGTTGAGGCTCGAGGTCGTTATGATGAGCTGTGTATCCCTATGTGTGTGATTCCTGCCACCATCAGCAACAACGTGCCAGGCACAGACTTCAGTTTGGGAGCAGACACGGCTGTGAACGCTGccatggagAGTTGTGATAAAATCAAGCAGTCTGCGTCTGGAACCAAGCGGCGCGTCTTCATCGTGGAGACCATGGGCGGATACTGCGGTTACCTAGCAACCACCACCGGCATCGCCGTGGGAGCAGACGCCGTCTACATCTTTGAGGAGTCGTTCAACATCCGCGAGCTGGAGaCGAACGTGGAGCATCTGACGGAAAAAATGAAGAATGATATTCAGAGAGGTctagtgttgAGGAATGAGAAGTGTCACAAGCACTACACCACTGACTTCATCTACAATCTGTACTCGGCCGAGGGCAGAGGTGTGTTCGACTGCAGGGTCAATGTCCTGGGTCACCTGCAGCAGGGCGGCGTTCCCACTTCGTTTGACAGGAACTTTGGCACCAAGCTGGGAGTGAAGTCGGTTCTGTGGCTCACAGAGAAGATGAACGACACGTACAGACAGGGCCGTGTGTTTGCGAACGCTCCTGATACGGCCTGCGTGATCGGCATGAAGAAGAAGGTGATGTCGTTCAGCCCCGTCACTGAACTCAAAGCACACACCGACTTTGAacacCGGATGCCGAAGGAGCAGTGGTGGCTCAATCTGCGTCCCATGTTGAAGATGTTGGCCAAATATCAGACCAGTTTTGACGAGTACGTGACCGGAGAGATCGAGCATGTGACGCGCCGCTCGCTCAGCGTGGAGACGGGCTTCtgatcttcatcatcttcttcatcatcacacattAACCTCTGAGCCCTAGAGTCCTCTCTCATCCTCGCTGTGTTCTGCGGTGCCTTTGTCTTGTATTTATTAGTTTCTAACCACTGATctgttgtaatattttcttCATGTTAGTCTTTATAGTTCAGTGATTGTGAGGAGTTAGATTTTTGGACACAGTCTTATCTCTGTTGactgatttagtttttctggCTGTCGTTTGATCCGCTCTgattatatttgtgtataatcttgttttctgtaacTATTTTGGCTGtcgtttgtttctttattccagaattgttgatgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119509 lncRNA upstream 439 11511474 ~ 11511894 (+) True G80809
TU119508 lncRNA upstream 3280 11508000 ~ 11509053 (+) True G80808
TU119503 lncRNA upstream 40032 11471971 ~ 11472301 (+) True G80804
TU119287 lncRNA upstream 60195 11449049 ~ 11452138 (+) True G80668
XR_006252074.1 lncRNA upstream 64812 11443640 ~ 11447521 (+) True LOC122353945
TU119516 lncRNA downstream 25957 11549615 ~ 11555713 (+) True G80814
TU119526 lncRNA downstream 33304 11556962 ~ 11559047 (+) True G80819
TU119535 lncRNA downstream 47444 11571102 ~ 11571431 (+) True G80825
XR_006252094.1 lncRNA downstream 134228 11657886 ~ 11672957 (+) False LOC122354243
TU119594 lncRNA downstream 159266 11682924 ~ 11683244 (+) True G80860
XM_043252195.1 mRNA upstream 4616 11505653 ~ 11507717 (+) False LOC122354145
XM_043252196.1 mRNA upstream 12411 11486516 ~ 11499922 (+) True orc2
XM_043251850.1 mRNA upstream 26851 11470319 ~ 11485482 (+) True ldb1b
XM_043251852.1 mRNA upstream 77809 11424607 ~ 11434524 (+) False cant1b
XM_043251851.1 mRNA upstream 77809 11426756 ~ 11434524 (+) True cant1b
XM_043251321.1 mRNA downstream 1365 11525023 ~ 11526933 (+) False rpl37a
XM_043252731.1 mRNA downstream 5061 11528719 ~ 11535114 (+) True eif4a3
XM_043252522.1 mRNA downstream 16020 11539678 ~ 11547713 (+) True opn6a
XM_043251529.1 mRNA downstream 74132 11597790 ~ 11599698 (+) True map1lc3c
XM_043252117.1 mRNA downstream 174666 11698324 ~ 11700214 (+) True tomm20b
TU119266 other upstream 4562 11505682 ~ 11507771 (+) False LOC122354145
TU119267 other upstream 4562 11505682 ~ 11507771 (+) True LOC122354145
TU119444 other upstream 285711 11222347 ~ 11226622 (+) True G80761
TU119245 other upstream 850363 10641132 ~ 10661970 (+) True G80638
TU119130 other upstream 1041146 10466622 ~ 10471187 (+) True G80551
TU119512 other downstream 1401 11525059 ~ 11527042 (+) True rpl37a
TU119513 other downstream 5076 11528734 ~ 11529636 (+) False eif4a3
TU119538 other downstream 56368 11580026 ~ 11672938 (+) False LOC122354243
TU119539 other downstream 56368 11580026 ~ 11660942 (+) True LOC122354243
TU119601 other downstream 174706 11698364 ~ 11700214 (+) False tomm20b

Expression Profile