RNA id: XM_043252196.1


Basic Information

Item Value
RNA id XM_043252196.1
length 2452
RNA type mRNA
GC content 0.51
exon number 16
gene id orc2
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11486516 ~ 11499922 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCCTCCTGTCACACGTGGGTTGGAATCTTTCCTGTGGCGCGGAATCGAGAAGTTCCCTCAGGTTTTCAACAGATCAAATTCCATCGAAATGTGGTTTTATTATGAAAACCGATGTTAATAAACGCGTGTGCGGGACAgatattacagtttaaagtcCGAGTTTAGCTCGTGAGCCGCAGGATGACGCAGAAACAGCCGTTAGAGGTTCGCTTCGTGTCTGATGAAGAGGTTTTGGATCATATTGTAGAGAAACAACAAGgtaaaaAACTGGTGACCCTGAAAACCCAGCAGAAATCCAAAagatgtgatgatgatgatgatgatgatgatgaagaggtGTTGAATGAGCAGAACTATGTGGACGCTCTGTGCGCCGGATCACAAGATGAGAGTGAAAACGGCTCGGTCACCGCAGGAGCGTCTGTCTTCTCGTTTCAGACCATCAAACGGGGGAATAAAATGGCTCAGATGGcgtcTGAATGGGCCCGGACGCCTGGGAAGAGCGTGACCTTCAGCACGTCAGACACAAACGAGGACTCGTCCAGCCCGACACGCGCCGCTAAGAAATCAGCCGATCAGAACAAAACCCCTCAGAAGGGAAAGAAGGTGCAGTTCATCTCAACGACTCCACACCGTCTGCGCAAGAGACTGTCAGCTCCGAACCTGCGCTCAGACAGCGAGAGTGATTTCTCCCCCTCGAActcggaggaggaggaggatgaggaagaacACGGCGGGAAGAGGGCCGAGCCGACCAAAACACCCAGCAAAAACACTTCAGCCGCTGCCCTTTACAAGACGCCCAGCAAGAAGGGCAGGAGAGCGGCAGAGTCTGATCTGGTGGAAGAGTATTTTGAGGCTCACAGCAGCTCTAAGGTTCTCACGTCCGATCGGACGCTCCAGAAGCTCCAGACGCCCAAGCTGGACCGGGAAACTCTGCTCAGCCTCCTGAGTGAAAACCAGCCGCGCTTCGCAGAGGAAATCAAGAAGATGAACGCTAAACACGAGAAGAACTTCAACCAGTGGATGCTGCAGCTGcaCATGGGTTTTAATATCCTGATCTTTGGTTTGGGCTCCAAGAAGCTCTTGCTGGAGAAGTTCTGCACCTCGATGCTGTCTGAGTATGATCATGTGGTGGTCAATGGCTTCTTCCCCAGTATGACCCTCAAAGCGATCCTCAGCTCCCTCACCTGCGGCGTGTTCGGACACGAGGGAACTTTCCGTAATCCTGCAGACCAGATCGACTTCATCATCAAAGCTCTGAGAGAAGACCCAAGCAATCACGTCTTCCTGCTCATCAATAACATCGACGGGCCCATGCTGAGGGGCGACAGGACCCAGCAGGCTCTGGGGCAGCTGGCGGCGCTTCCCAACATGCACCTGCTGGCCTCCATCGACCACATCAACGCTCCTCTCATCTGGGATCAAGCGAAGATGAGCATGTTCAACTGGCTGTGGTACGAAACCACCACCTACCTGCAGTACACCGAGGAGACGTCCTACGAGAACTCCCTGCTGGTGCAGCAGACCGGAGCCCTGGCCCTCAGCTCACTCACACACGTGCTACGGAGCCTCACGCCTAACGccagGGGAATCTTCAGATTGCTGGCTGAGTTTCAGCTGGAGAACAAGGACAATCCTGCATACACAGGACTGTCTTTCCAGGACTTCTACCAGCGCTGTCGTGAGTCGTTCCTGGTGAACAGTGACATCACGCTCCGGACACAGCTCACCGAGTTCAGAGACCACAAACTCATCCGCACCAAGAAGgGCGCTGATGGAGTGGAGTATCTGCTGATCCCGGTGGATAACGGCACTCTGAGCGACTTCTTGGAGAAAAACGACGTGGAGTGAAACCAGGAAAACCTCGCTGCTGTCCACGGATCAGCGAACGTCTTTCTGATCAAGAACTTGCCGGCATCGTATCATAACTTGTTTCGTTTTGCAGTTCACGTCCCATggaaagtgaatgggtgccgtcagaatgagaaacatcacaataatccacggcACTCCGGTCCATCGGTGAACATCCGGAGGAGAcggaagatcaaactaatccagcgttGAGAGgtttttaactcaaatatgagtctgtaataataaaagtgttctGATCTGAAtgaggagagaaatctgcacggATCAAAACACCTCTAAACTAATATCTGAAgagttattatagattatatttagtgctggatctgtcttctccagatgttcactgatggactgtggattatagagatgtttttatgagactctcattctgacggcacccattcgcttccATTGCTGAGACGCTGATGCAGTGCTACATTACTTCCAATCTCGTAGtgaaacaaattaatttcagcACAATGTCATCCGGTGTCTGCGGCTCCTTCCTGTACAGCGTTCTGTAAAGTTTGTTTAGGATCGCAAAGTGAACACAATAAATATTCTTATGCA

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0000808 origin recognition complex cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K02604 ORC2; origin recognition complex subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119503 lncRNA upstream 14215 11471971 ~ 11472301 (+) True G80804
TU119287 lncRNA upstream 34378 11449049 ~ 11452138 (+) True G80668
XR_006252074.1 lncRNA upstream 38995 11443640 ~ 11447521 (+) True LOC122353945
XR_006252073.1 lncRNA upstream 38996 11443647 ~ 11447520 (+) False LOC122353945
TU119286 lncRNA upstream 47790 11437907 ~ 11438726 (+) True G80667
TU119508 lncRNA downstream 8078 11508000 ~ 11509053 (+) True G80808
TU119509 lncRNA downstream 11552 11511474 ~ 11511894 (+) True G80809
TU119516 lncRNA downstream 49693 11549615 ~ 11555713 (+) True G80814
TU119526 lncRNA downstream 57040 11556962 ~ 11559047 (+) True G80819
TU119535 lncRNA downstream 71180 11571102 ~ 11571431 (+) True G80825
XM_043251850.1 mRNA upstream 1034 11470319 ~ 11485482 (+) True ldb1b
XM_043251852.1 mRNA upstream 51992 11424607 ~ 11434524 (+) False cant1b
XM_043251851.1 mRNA upstream 51992 11426756 ~ 11434524 (+) True cant1b
XM_043251854.1 mRNA upstream 62302 11417605 ~ 11424214 (+) False afmid
XM_043251853.1 mRNA upstream 62302 11417607 ~ 11424214 (+) True afmid
XM_043252195.1 mRNA downstream 5731 11505653 ~ 11507717 (+) False LOC122354145
XM_043252192.1 mRNA downstream 12411 11512333 ~ 11523658 (+) True LOC122354143
XM_043251321.1 mRNA downstream 25101 11525023 ~ 11526933 (+) False rpl37a
XM_043252731.1 mRNA downstream 28797 11528719 ~ 11535114 (+) True eif4a3
XM_043252522.1 mRNA downstream 39756 11539678 ~ 11547713 (+) True opn6a
TU119444 other upstream 259894 11222347 ~ 11226622 (+) True G80761
TU119245 other upstream 824546 10641132 ~ 10661970 (+) True G80638
TU119130 other upstream 1015329 10466622 ~ 10471187 (+) True G80551
TU118515 other upstream 2605040 8879651 ~ 8881476 (+) False setmar
TU118487 other upstream 2667237 8818390 ~ 8819279 (+) True G80095
TU119266 other downstream 5760 11505682 ~ 11507771 (+) False LOC122354145
TU119267 other downstream 5760 11505682 ~ 11507771 (+) True LOC122354145
TU119512 other downstream 25137 11525059 ~ 11527042 (+) True rpl37a
TU119513 other downstream 28812 11528734 ~ 11529636 (+) False eif4a3
TU119538 other downstream 80104 11580026 ~ 11672938 (+) False LOC122354243

Expression Profile