RNA id: XM_043252223.1


Basic Information

Item Value
RNA id XM_043252223.1
length 4693
RNA type mRNA
GC content 0.51
exon number 26
gene id adgrl2a
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 4060929 ~ 4152591 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCCCGACGAGGGGCATGTAGCAGTGCAAATCCAGTGGAAATTGGCCAAAAGTTgtatacacaaaacaaataatctgCTTTGCTCTCCTGCCCGGCTCTGCGTAATCGTCTTCCACAACAGCCATTGCTTAAGTGGTGCTCGTGATAATGTTTACGCGATCGTTTCCTCGCCGACTCCGTCTCCGCGCGATCCAGGAATCCAGTTCCAGAGTTTAAGCGCAGCCCCTCTCTCACATCTCTGCTCTGCTCGCACAGAGAGAAATCCCTCAGCCGCGGGCCGCTCTCTCTCCGGCTGGAACGGGACTCAACAAACCCGAAGAAGACGCGCAAaggactgaaataaataaagaggaCTGCTTTTGCTTGTTAATTTTTCTCGCGTtgctttttgctatttttttcattagttgCCCTGTGAACTGCTCCGCGTCCCCCCCCCACCTTCTCTCCTCCAGTAGGACAGACGGACTCTTTCACCGTTCGCGCATCTCTTCATCCCGGCGCGGCGGAGCGCAGGACCGAGCGCCGGTCTGCGGGAATGTGAGCGCTCACGCCGGGAAAAAGGCTCGAACGAGCAGAGCATGTGCGCGTTGTGCGCTGAGACGCGCAGCTCCTGTTCGAAGACCCGCTTGTAATTGCCTCAACTGATTAATTAACTTTCCGCCTGATTTTTCTTCAACTATCCGCTCACTCACAAAAGGCTCGGAGGTCAATGATGGTTATCTCTCAGAGTGACTTCACCGGATCGTTGTGACTACAGTGATTTCGACCCAGACATGTGGAAAGCGGAGAGTCCAGTCAGAGCCAGGATGGGATGTTCAGAATGGAAGTCTTTGGTCCTCTGCGGCCTGGTGTTCGTCTTGACGGTTGTACAGAGTTCTGACGGTTTTAGCCGGGCAGCCATGCCATTCGGTCTGGTGAGGCGGGAACTGTCTTGCGAGGGTTATCCCATCGACCTACGCTGtccaggaagtgatgtcatcaTGATCGAGAGTGCCAATTACGGCCGGACCGACGACAAGATCTGCGACGCTGACCCCTTTCAGATGGAGAACATCAACTGTTATCTGCCCGATGCATTCAAGATCATGTCTCAAAGGTGTAACAACAGAACACAGTGCATCGTCATCACTGGACCAGATGTTTTTCCTGACCCCTGCCCAGGAACATATAAGTACCTTGAAGTCCAGTATGAATGTGTTCCCTACAAAGTGGAGCAAAAAGTTTTTGTTTGTCCCGGAACTCTGAAAGCGGTTGGAGATCCGTCATTTCTTTACGAGGCTGAGCAACAAGCGGGGTCGTGGTGCAAAGACCCTCTCCAGGCAGGAGACAAGGTTTATTTCATGCCCTGGACCCCTTACAGAACAGACACACTCATCGAGTACAACTCGCTTGACGACTTTCAAAACTCCCGACAGACCACGACGTACAAACTCCCCCACCGAGTTGATGGCACAGGATTTGTGGTGTATGACGGGGCGGTGTTTTTCAACAAGGAAAGGACACGTAACATTGTCAAATTTGACCTTCGGACCAGAATCAAAAGTGGGGAAGCGattataaataatgctaacTATCATGACACCTCACCGTACAAGTGGGGTGGGAAAACAGACATCGACTTGGCGGTTGATGAAAACGGCCTCTGGGTGATCTACGCTACCGAGCAGAACAATGGCATGATGGTGATCAGTCAGCTCAACCCCTACACCCTTCGCTTTGAGGCTACTTGGGATACCACCTACGACAAGCGGTCGGCCTCCAATGCTTTCATGATCTGTGGGGTTCTGTATGTGGTCCGATCCACATACGAAGACAACGAAAGCGAAGTCAGTAAGAGCCTCATCGACTACATGTACAACACCAAACAGAACCGAGGTGAATACGTCGACATCCACTTCCCTAACCAGTACCAGTACATCGCCGCTGTGGAATACAACCCACGAGACAACCAGCTGTATGTGTGGAATAACTTCTACATCCTGCGGTACAATCTGGTGTTTGGTCCACCTGATCCAGCTCACGcACCACCAATCTCAGAGGCATCCACAACACCCAAGTTACTAAAACCAACCACCACTACAACAACCACTGCTCAACCGAGAGGTCAGGTGACTACAGTTACCACTACAGGGACCAGAGCTGTTAATAAGACACCCAAATCGCCGGCTGTACTTCCCCAAACCACCACGCCTCCTCCGCTGGAGTCTTTCCCTCCACCGGAGCGCTTCTGCGAGAGCGTAGAGCTCAGGGACATTCTGTGGCCGCAGACGCAGAGGGGCATGCTGGTGGAACGACCCTGCCCCAAAGGAACCCGAGGCACTGCCTCTTACCTGTGCGTTCTGTCCACTGGGACCTGGAACCCAAAAGGCCCAGATCTGAGCAACTGCACATCCCACTGGGTGAATCAAGTCGCACAAAAGATCCGGAGCGGGGAAAACGCAGCCAACCTGGCGAACGAGCTGGCCAAACATACCAAAGGAGCCATCTTTGCCGGTGACATTAGCTCTACCATGAGGCTCATGGAGCAGCTGGTGGATATTCTAGACGCTCAGTTACAGGAACTGCGACCCAGCGAGAAAGACTCCACCGGCCGCAGCTTCAATAAGCTTCAAAAGCGAGAAAGGACGTGCAGGGCGTATATGAAGGCTATCGTGGATACAGTCGACAACCTCCTCAGACCGGAGGCTCTGAAATCGTGGCGAGATATGAATACCACGGAGCAGACGCACGCTGCAACTATGTTACTGGACACCCTGGAGGAAGGAGCCTTTGTCCTTGCAGACAATTTAATGGAACCGGCCATCGTGAAAGTGCCAGCCAGTAATATAATTCTGGATGTTTACGTGCTGAGCACAGATGGGCAGGTTCAAGATTTCAGGTTTCCCCAGAGTGGCAGGAGTGGTATTTCTATCCAATTGTCTTCCAATACTGTGAAACTCAACAGTCGTAATGGTGTTGCCAAGTTGGTTTTTGCTCTTTATAAGAACCTGGGGCAGTTTCTGAGCACAGACAACGCGACAATGAAGCTCGGCCATGAGGCTAACGGACGCAATCTCTCTGTGGCTGTGAATTCCGACGTCATAGCCGCCTCAATAAACAAAGAATCCAGTCGTGTATTTATATCGGAGCCTGTGATTTTCACCCTGGAGCACATCGACATGCAACATTACTATGACTCCAACTGCTCTTTTTGGAACTACTCCGAGAGAACCATGATGGGATACTGGTCCACTCAGGGCTGCAAACTCATCCACGCCAATAAAAGTCATACCACCTGCTCCTGTAGTCATCTCACCAACTTTGCGGTGCTCATGGCTCATCGAGAGCTGCTGgGTGCAGATAAAGTCCAGGAGCTGTTGTTGAGCGTCATCAGTCGTGTGGGTATCGTGGTATCCCTCATCTGTCTGGCCATGAGCATCTTCACCTTCTGTTTCTTCCGTGGGCTGCAGAGTGACAGGAACACCATCCACAAAAACCTGTGCATAAACCTTTTCATCGCTGAGCTCATCTTCCTCATCGGAATCGACATGACAGAGCCCAGGATGGCCTGCTCCATAATTGCAGGAATCCTGCATTACTTTTTTCTGGCATCTTTCGCATGGATGTGTTTGGAAGGGGTTCAGCTCTATCTGATGCTGGTGGAGGTCTTCGAGAGTGAATATTCACGCAGGAGGTATTTCTACATGGCGGGATATCTCCTACCCGCTGTGGTCGTGGGCGTTTCCGCTGCTGTAGACTACAGAAGCTACGGGACCAAGAAAGCATGTTGGCTCAGGATGGACAATCACTTCATCTGGAGTTTCATTGGACCTGTCACCTTCATTATTATGCTCAATCTCATCTTCCTGCTCATCACAATGTACAAAATGATGAAACACTCTACATCGCTGAAACCTGATTCCAGCCGGCTGGAGCACATCAATAATTATCGCGTCTGTGATGGCTATTATAATTCTGATTTGCCTGGCTATGAAGATAATAAACCATTTATCAAGTCGTGGGTTATGGGCGGCTTTGCTCTGCTGTGTCTCTTGGGCCTGACCTGGTCATTTGGCTTGTTCTTCATCAGTGAGTCGTCTGTAGTCTTGGCGTACCTCTTCACCATCTTCAACACATTCCAGGGCATGTTTATCTTCACCTTCCACTGCCTGCTTCAGAAGAAAGTTCGGAGAGAGTACAGCAAATGCCTCCGACACACGTACTGCTGTAGCGGGATCACGACAGAGAGCTCACACAGCTCCACAAAGACCTCAACAACACGGACAAGCGCTCGCTATTCCTCTGGTACTCAGAGTCGAATCAGAAGAATGTGGAACGACACAGTCAGAAAACAGTCTGAGTCCTCTTTCATCTCAGGAGACATCAACAGCACATCAACCCTCAACCAAGGAATGACGGGCAATTATCTTCTTACTAACCCTCTTCTGAGACCACAAGGCACTAATAACCCCTACAACACCTTACTGGCTGAAACTATCGTATGTAACACACCAACGGTGCCAGTCTTTCACTCTCCAGCAGCGCTCAGGTCTGCTGGCCTGAACAGACAGACTTGATGACATTCGGTGACCAGCGGCAGAGATACGAACACGTTCGGGACTCTACCACTCAACGGCAACTTTAATAACAGCTACTCACTTCATAACTACAGCGACGGCGTGCAGGTGGTGGATTGCGGGCTCAGTCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116965 lncRNA upstream 131401 3796422 ~ 3929528 (+) True LOC122354455
TU116987 lncRNA upstream 141500 3918837 ~ 3919429 (+) True G79053
TU116984 lncRNA upstream 173980 3882806 ~ 3886949 (+) True G79051
TU116968 lncRNA upstream 202559 3800473 ~ 3858370 (+) True G79037
TU116977 lncRNA upstream 281330 3779187 ~ 3779599 (+) False nwd1
TU117135 lncRNA downstream 29778 4179542 ~ 4294755 (+) True G79144
TU117157 lncRNA downstream 226122 4375886 ~ 4383979 (+) False samd13
TU117158 lncRNA downstream 226122 4375886 ~ 4383979 (+) True samd13
TU117159 lncRNA downstream 226122 4375886 ~ 4383979 (+) False samd13
TU117160 lncRNA downstream 226122 4375886 ~ 4383979 (+) False samd13
XM_043252939.1 mRNA upstream 101700 3953003 ~ 3959229 (+) True diras1a
XM_043252516.1 mRNA upstream 139867 3920064 ~ 3921062 (+) True LOC122354347
XM_043252415.1 mRNA upstream 206632 3852612 ~ 3854297 (+) True LOC122354262
XM_043252649.1 mRNA upstream 262865 3796406 ~ 3798064 (+) False LOC122354455
XM_043251546.1 mRNA upstream 264983 3791905 ~ 3795946 (+) True reep6
XM_043251836.1 mRNA downstream 218661 4368425 ~ 4375388 (+) True prkacba
XM_043251839.1 mRNA downstream 226075 4375839 ~ 4380606 (+) False samd13
XM_043251840.1 mRNA downstream 226075 4375839 ~ 4380606 (+) False samd13
XM_043251841.1 mRNA downstream 226103 4375867 ~ 4380606 (+) False samd13
XM_043251340.1 mRNA downstream 235384 4385148 ~ 4387841 (+) True dnase2b
unassigned_transcript_1801 other upstream 153341 3907516 ~ 3907588 (+) True trnaq-cug_18
unassigned_transcript_1800 other upstream 276894 3783964 ~ 3784035 (+) True trnaq-cug_17
XR_006252155.1 other upstream 313917 3746927 ~ 3747012 (+) True LOC122354704
XR_006252154.1 other upstream 314187 3746650 ~ 3746742 (+) True LOC122354703
TU116739 other upstream 699639 3358259 ~ 3361290 (+) True LOC122353713
XR_006252072.1 other downstream 218662 4368426 ~ 4375388 (+) False prkacba
TU117441 other downstream 1136779 5286543 ~ 5316867 (+) False megf6b
TU117808 other downstream 2673812 6823576 ~ 6824545 (+) False G79640
TU118181 other downstream 4131051 8280815 ~ 8282901 (+) True G79889
TU118437 other downstream 4452423 8602187 ~ 8604284 (+) True G80058

Expression Profile