RNA id: XM_043252242.1


Basic Information

Item Value
RNA id XM_043252242.1
length 2208
RNA type mRNA
GC content 0.50
exon number 15
gene id tbl1xr1a
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 16431654 ~ 16472967 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGAAGCCGTTGGCTGCTCCTGAACCGTTTGGCTCTTTCTCCACTAGCAAACAGCCCCACAATGTACCTCAATCGCtcttaaatctatttttaaacgGTTTTATTCCGCTCCACGCCGATGCGAACGGGACCGGACGCTTGTTTGGGAATTTATCTGACGATCTGCCGCCTCAAAGCAGCTTTATAACGCTTTGTTTGAGCGCTATTTGACAAAATAACCGAGGAGGAGGAAATTCCACACAAGCAGTGAAAGGCAGCCCTCGCGCTCATCCGGGTATAAAAGCTAGTGTCCTGTGTGCTGACCTCATGGTGTAAGCAGGTGTGAAGATGAGTATTAGCAGCGATGAGGTCAACTTCCTGGTGTATAGATACCTGCAGGAGTCAGGGTTTTCCCACTCGGCCTTCACATTCGGCATTGAGAGTCACATCAGTCAGTCTAACATCAACGGCGCCCTAGTGCCCCCTGCTGCCCTGATCTCCATCATTCAGAAGGGCCTGCAGTACGTGGAAGCTGAAGTCAGCATCAATGAGGATGGCACGCTGTTCGATGGGCGGCCCATTGAATCTCTGTCATTGATCGACGCGGTGATGCCCGATGTGGTACAGACCCGGCAGCAGGCGTACCGAGACAAACTGGCCCAGCAACAGGCCGGCGCAGCTCCCTCTGCAACCAGCACCAACATGCAGGGTAACGCCAAAAACGGAGAAAACACCGCAAATGGAGAGGAGAACGGTGCTCACGCCTTACCTAATAACCACGCAGACATGATGGACGTGGATGTAGATGTGGAGATCCCTCAGAATAAAGCCATGGTGCTGAGAGGTCACGAGTCAGAGGTCTTCATCTGCGCCTGGAACCCTGTCAGTGACCTGCTCGCCTCCGGGTCTGGAGACTCAACGGCGCGCATCTGGAATCTGAGTGAGAACAGCAGCAGTAGCTCTACACAGCTCGTCCTGAGGCACTGCATACGGGAAGGAGGCCAAGACGTGCCCAGCAACAAAGACGTCACATCGTTAGACTGGAACAGTGAAGGTACACTATTAGCCACGGGCTCCTATGATGGCTTTGCAAGAATATGGACTAAAGATGGTAATCTGGCCAGTACCCTTGGTCAACATAAAGGTCCAATATTCGCAttaaaatggaacaaaaaagGAAACTTTATCCTCAGTGCTGGTGTTGATAAGACAACAATCATTTGGGATGCTCACACAGGGGAAGCCAAACAGCAGTTCCCGTTTCATTCAGCACCCGCTCTGGACGTGGACTGGCAGAGTAACAACACGTTTGCCTCCTGTAGCACAGACATGTGCATCCATGTGTGCAAACTGGGCCAGGACCGACCCATTAAGACATTCCAAGGACACACAAATGAAGTTAATGCAATCAAATGGGATCCGACCGGTAACCTGCTGGCGTCGTGTTCTGATGACATGACTCTTAAGATCTGGAGTATGAAACAGGACACTTGTGTTCATGATTTGCAAGCTCACAGCAAAGAAATCTACACTATCAAATGGAGCCCCACAGGTCCAGGAACCAACAACCCCAATGCCAATTTAATGCTGGCCAGTGCTTCCTTCGACTCCACTGTTCGGCTTTGGGACGTAGATCGAGGCATCTGCATCCACACACTAACCAAACACCAGGAGCCCGTGTACAGCGTGGCCTTCAGCCCCGACGGACGCCATCTAGCCAGCGGCTCTTTTGACAAATGTGTCCACATCTGGAACACGCAGACTGGTGCTTTAGTCCATAGCTACAGGGGGACAGGGGGCATTTTTGAAGTTTGCTGGAATGCAGCAGGAGACAAAGTAGGAGCAAGTGCGTCAGACGGCTCTGTTTGTGTATTAGATCTGCGGAAATAGCGCTGCTTGCTGGAAGCCATGGACCGACTATGAATGTGTACATAGCCAAAATGACTGTCCCTGACCCTCAAACTGCTACAGTCCCTAGTGAACCATGGCCAGCCactacagacaaacaaacacaagcacCCTGACGCCACAGGCCGAGCGGAGAGGATGTGATTCCAACCAGAGACATTCAAATGACTTTTgtaaggtggaaaaaaaaaaaacaaacaaacattataacAGAGGAAGAAGGAAAGACAAGACTGGTATATGTACCAAATTTGGAAGATATTTTACTATTTGTTCTCCAAAACCAATCTCATCGAAATAAACAAACGAAAGGATTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121981 lncRNA downstream 85934 16341847 ~ 16345720 (-) True G82378
TU121984 lncRNA downstream 91549 16339857 ~ 16340105 (-) True G82381
TU121978 lncRNA downstream 96040 16335393 ~ 16335614 (-) True G82376
XR_006252137.1 lncRNA downstream 97584 16332144 ~ 16334070 (-) True LOC122354638
TU121976 lncRNA downstream 148036 16283416 ~ 16283618 (-) True G82374
XR_006252117.1 lncRNA upstream 26249 16499216 ~ 16503434 (-) True LOC122354516
TU122073 lncRNA upstream 115427 16588394 ~ 16588760 (-) True G82437
TU122076 lncRNA upstream 117839 16590806 ~ 16592881 (-) True LOC122353775
TU122081 lncRNA upstream 131759 16604726 ~ 16605403 (-) False LOC122353776
TU122082 lncRNA upstream 133832 16606799 ~ 16609708 (-) True G82445
XM_043251651.1 mRNA downstream 482064 15842161 ~ 15949590 (-) True LOC122353772
XM_043251292.1 mRNA downstream 649965 15776187 ~ 15781689 (-) True b3gnt5a
XM_043251558.1 mRNA downstream 783309 15646561 ~ 15648345 (-) True LOC122353685
XM_043251650.1 mRNA downstream 800386 15630130 ~ 15631268 (-) True LOC122353771
XM_043252027.1 mRNA downstream 807641 15622922 ~ 15624013 (-) True zgc:193807
XM_043252937.1 mRNA upstream 81441 16554408 ~ 16555675 (-) True LOC122354663
XM_043251654.1 mRNA upstream 118344 16591311 ~ 16593930 (-) False LOC122353775
XM_043251655.1 mRNA upstream 131037 16604004 ~ 16606580 (-) True LOC122353776
XM_043252972.1 mRNA upstream 182165 16655132 ~ 16660615 (-) True LOC122354689
XM_043252532.1 mRNA upstream 293406 16766373 ~ 16769063 (-) True LOC122354367
TU121711 other downstream 1029963 15400918 ~ 15401691 (-) True LOC122354564
TU121487 other downstream 1196598 15234488 ~ 15235056 (-) False LOC122354561
TU121492 other downstream 1217596 15204961 ~ 15214058 (-) True G82067
TU121170 other downstream 1895262 14534718 ~ 14536392 (-) True G81866
XR_006252040.1 other downstream 1979914 14442601 ~ 14451740 (-) True chrna4b
TU122317 other upstream 1064536 17537503 ~ 17540171 (-) False G82585
TU122319 other upstream 1065416 17538383 ~ 17540171 (-) True G82585
TU122326 other upstream 1077614 17550581 ~ 17559836 (-) True G82588
TU122328 other upstream 1100635 17573602 ~ 17576984 (-) True G82590
XR_006252134.1 other upstream 1161839 17634806 ~ 17635665 (-) False LOC122354622

Expression Profile